PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012631.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 602aa    MW: 65328.9 Da    PI: 6.6603
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012631.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.51.4e-12262318155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV++++++gr++A+++d  +  +g  rk  + g ++t+++Aa+a++ a++k++g
  Do012631.1 262 SRYRGVTRHRWTGRYEAHLWDnSCXkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 318
                 79*******************77777775446655.77***99*************98 PP
2AP243.58.1e-14361410153
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                 s y+GV++++++grW ++I  +     +k  +lg+f t eeAa+a++ a+  +
  Do012631.1 361 SIYRGVTRHHQQGRWQSRIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIXF 410
                 57****************988532...5*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-9262318IPR001471AP2/ERF domain
CDDcd000185.89E-18262327No hitNo description
SuperFamilySSF541712.29E-14262328IPR016177DNA-binding domain
SMARTSM003808.4E-22263332IPR001471AP2/ERF domain
PROSITE profilePS5103217.873263326IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-12263327IPR001471AP2/ERF domain
CDDcd000185.18E-22361422No hitNo description
SuperFamilySSF541713.27E-16361421IPR016177DNA-binding domain
PfamPF008477.5E-8361409IPR001471AP2/ERF domain
SMARTSM003806.2E-29362426IPR001471AP2/ERF domain
PROSITE profilePS5103217.912362420IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.4E-17362420IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MEVPNASEPA PAHHAPPPSS TTISSSCNNA AATSNFLFSP MAAPYPGYYC VGGAYGDGTS  60
SAGVYYSHLP TMTLKSDGSI CNIEGMMPSS PPKLEDFLGG GNGGGQEAAT YYSHQQGQEE  120
EASRDYHQYQ HHQFVPYNFQ PLTEAEMLQE DAAPMDEAMA AAKNYLLTSY GACYSNGEMH  180
PLSLSMMSPG SQSSSCVSAA PQQQPPQHQM AAVAAAASAA AAQGRSNGGG EQCVGKKRGT  240
GKGGHKQPVH RKSIETFGQR TSRYRGVTRH RWTGRYEAHL WDNSCXKDGQ TRKGRQGGYD  300
TEDKAARAYD LAALKYWGPA THINFPVENY QDELEEMKNM TRQEFVAHLR RRSSGFSRGA  360
SIYRGVTRHH QQGRWQSRIG RVAGNKDLYL GTFTTQEEAA EAYDIAAIXF XGLNAVTNFD  420
ITRYDVDKIL ESSTLLPVEE ARKVKAIEAA NCVPMMHDGG RELNPTEETT SADWRMVLHG  480
SSQESVHCPE AVDLQKGIMS DSHSSLHGIV GLDVRCVSHD HHLDIPGKTS SVNFSNSSSL  540
VTSVCNSREV SPERLGLAML YGKQPNAVSL ASMSPWMPMP VAAPTAQHVV SHLPVFAAWA  600
DA
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012631.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025796858.10.0AP2-like ethylene-responsive transcription factor CRL5
SwissprotQ84Z021e-131CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A1E5VP600.0A0A1E5VP60_9POAL; AP2-like ethylene-responsive transcription factor ANT
STRINGSi034722m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-94AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]