PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012618.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 562aa    MW: 62768.4 Da    PI: 4.6755
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012618.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.34.4e-1261935622374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cAea+s+ +  +aq+++++l++ ++ +gdp qR+aay++e+Laa++++s++++y+al+++e++   +  +l+a+++++e++P++++++++aN 
  Do012618.1 193 KQLLFDCAEAISEYSVDEAQSIITELRQKVAIQGDPSQRIAAYLVEGLAATIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCFRLGFMAANY 288
                 589*****************************************************************9...89999********************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aIlea +gee vHiiDfdi+qG Q+++L+q L + +++p  lRiTgv++pes+      l+ +g+rL+k+Ae ++vpfef++ va+++ed+++ +L+++
  Do012618.1 289 AILEACKGEEVVHIIDFDINQGSQYITLIQFLRNNNNKPRLLRITGVDDPESVhrAVGGLKVVGQRLEKLAEDCEVPFEFRA-VASNIEDVTPAMLDCS 386
                 ***************************************************99888899***********************.7*************** PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEal+Vn+++ lh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl rf e  +yy alfdsl+a+lpres +r +vEr++l+reivn
  Do012618.1 387 PGEALIVNFAFLLHHLPDESVSMVNERDQLLRMVKGLRPKLVTLVEQDANTNTTPFLSRFREVYDYYLALFDSLDATLPRESPDRLNVERQCLAREIVN 485
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++aceg +r+er e ++kWr+r+ +aGF p p+s+++ + +k+ l+ + ++ yr e+ ++ l +gW d++Lv+ SaW+
  Do012618.1 486 ILACEGPDRVERYEVAGKWRARMAMAGFVPSPFSNSVIDGIKSQLKSYCNK-YRFEKVHDGLHFGWGDKTLVVSSAWQ 562
                 ************************************************966.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.109166543IPR005202Transcription factor GRAS
PfamPF035141.5E-123193562IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
MSFVRQADPS ASCAESPYIH KFGPPGSVFP AKRFASGTEL LHHGPQPYNA AGYGQSGFNG  60
TAPHAFQNSF YNTDSHVESH FNDATCSPAI SNISQQNSQS LSDNQNSDLE VEFDEDEIRL  120
KLQELEHALL DDDEMFSDLS GSINDEWNDN MKNNNDWTNT MKNIMSADSP KESSPESSLC  180
CPDSNNGEGR HPKQLLFDCA EAISEYSVDE AQSIITELRQ KVAIQGDPSQ RIAAYLVEGL  240
AATIQSSGKG IYRALRCKEA PTLYQLSAMQ ILFEICPCFR LGFMAANYAI LEACKGEEVV  300
HIIDFDINQG SQYITLIQFL RNNNNKPRLL RITGVDDPES VHRAVGGLKV VGQRLEKLAE  360
DCEVPFEFRA VASNIEDVTP AMLDCSPGEA LIVNFAFLLH HLPDESVSMV NERDQLLRMV  420
KGLRPKLVTL VEQDANTNTT PFLSRFREVY DYYLALFDSL DATLPRESPD RLNVERQCLA  480
REIVNILACE GPDRVERYEV AGKWRARMAM AGFVPSPFSN SVIDGIKSQL KSYCNKYRFE  540
KVHDGLHFGW GDKTLVVSSA WQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A4e-5318856114377Protein SCARECROW
5b3h_D4e-5318856114377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012618.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9485341e-112EU948534.1 Zea mays clone 379741 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962026.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1E5VSU20.0A0A1E5VSU2_9POAL; Scarecrow-like protein 1
STRINGSi021635m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.11e-180SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]