PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | ERF | ||||||||
Protein Properties | Length: 210aa MW: 22121.6 Da PI: 4.8284 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.5e-18 | 24 | 74 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+G+r++ g+Wv+eIr+p++ + r++lg++ t+e+Aa+a++aa+++l+g+ Do012584.1 24 PVYRGIRYRG--GKWVSEIREPRK---SNRIWLGTYPTPEMAAAAYDAAALALRGA 74 68*****975..*********954...49************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.9E-12 | 24 | 73 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-18 | 25 | 81 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 9.0E-27 | 25 | 81 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.139 | 25 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-24 | 25 | 87 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-14 | 26 | 81 | No hit | No description |
PRINTS | PR00367 | 2.3E-6 | 26 | 37 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 63 | 83 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MEQEQDAAGT PLPLRRVRAD TRHPVYRGIR YRGGKWVSEI REPRKSNRIW LGTYPTPEMA 60 AAAYDAAALA LRGAEAALNF PGAAASRPAP ASCSPDDIRA AAAAAAAMVG PGERAGHSHL 120 PHAAAAASAS TSRADDAGAA GGASAWDQRA GEKRIVDEDD VFQMPRLLEG MAEGLMMSPP 180 RLSPTADGAV LLLPEEEDEN DDGMSLWDHS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012584.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC134236 | 5e-84 | AC134236.4 Oryza sativa Japonica Group chromosome 3 clone OSJNBa0056G13, complete sequence. | |||
GenBank | AK108930 | 5e-84 | AK108930.1 Oryza sativa Japonica Group cDNA clone:002-153-A05, full insert sequence. | |||
GenBank | AP014959 | 5e-84 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012611 | 5e-84 | CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797835.1 | 2e-86 | ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9SJR0 | 1e-39 | ERF24_ARATH; Ethylene-responsive transcription factor ERF024 | ||||
TrEMBL | A0A1E5WJH0 | 1e-146 | A0A1E5WJH0_9POAL; Uncharacterized protein | ||||
STRING | Si039264m | 6e-95 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 8e-24 | ERF family protein |