PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 308aa MW: 33192.3 Da PI: 11.6525 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 14.5 | 6.5e-05 | 108 | 183 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC..................................TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkas...............................kapskKlsKaeiLekAveYIksL 54 rr R+r+ ++eLr llP ++ +++ k +s +iL A+ +k L Do012552.1 108 RRHRRRVSALYAELRALLPGLPtarrpwvspsarallrscwpvcrvcltpfclGGRRKPVSREQILAAATARVKAL 183 899*****************666*****************************6666666*********99988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.55 | 98 | 183 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
LQLLFQANRH QQKADTSLSL SSSPSARSHA HCTPDRTGTK AMASCYREQP LSSRTETEGP 60 TRRESLLAAD PLMAAGAGGL PLDAVGAPPA TAESAVERRR RLDRDGNRRH RRRVSALYAE 120 LRALLPGLPT ARRPWVSPSA RALLRSCWPV CRVCLTPFCL GGRRKPVSRE QILAAATARV 180 KALEDAAAML EAYRGRPRPS RREVGVSSGT VTFTARLPAP APAGALRRVV EAVERRGVRV 240 LVATMARHGG REGGVGFLVV AITAAAAAPE HLEIKAEKFL LYSLEKSQNL AAFLSMNHLG 300 FSLHVPVA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012552.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6T2P3 | 2e-38 | A0A3L6T2P3_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J14592.1.p | 3e-30 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |