PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 18893.6 Da PI: 10.3936 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 17.1 | 1e-05 | 33 | 73 | 12 | 54 |
HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 R+ + s f+eL +lP + +s+ sK ei+ A+ +k L Do012550.1 33 QRRTVSSLFAELGAMLPDlP---TSRPASKEEIVDAATARVKAL 73 589999************66...9999**********9988877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.905 | 21 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.11E-4 | 27 | 75 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.7E-4 | 29 | 76 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.49E-6 | 30 | 86 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MAGGGWLPLD LSLATAGASA SVSSAGERRP RVQRRTVSSL FAELGAMLPD LPTSRPASKE 60 EIVDAATARV KALEETAAVL ETYRGVRGHP RYGSAGAGTA TATPRPPEVA VAVGTVCFSA 120 RLPAPRPGSV TRVLEAFHRR GVEVLVVTVA RHGHGHGAAV VTVTAAAAPP DVLEMIRADI 180 AGIH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680863.1 | 5e-68 | uncharacterized protein LOC111256704 | ||||
TrEMBL | A0A1E5WL37 | 1e-123 | A0A1E5WL37_9POAL; Uncharacterized protein | ||||
STRING | Si025174m | 2e-67 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9141 | 19 | 31 |