PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012533.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 721aa    MW: 79485.9 Da    PI: 6.1278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012533.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.8e-13520567355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 ++h   Er+RR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  Do012533.1 520 ASHVVKERQRREKLNERFIVLRSLVPFV-----TKMDKASILGDTIEYVKQLR 567
                 58999**********************8.....8*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-4412217IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.218517566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-17520581IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.7E-11521566IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-17521576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.57E-14521571No hitNo description
SMARTSM003532.0E-16523572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00669650691No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 721 aa     Download sequence    Send to blast
MAAVAGGGEA VQKALQSVAQ GTGWTYSVLW CLCPHQGALV WAEGHYNGAI KTRKTTVTPG  60
GEEEEEEEEE EEATEAGAGR AARRRSRQLR ELYDSLAREA TADGGGSRDA ALQVVVSRRP  120
SAALAPEDLT ETEWFYLMCA SYCFPPAVGL PGEAFARRGH VWLCGANKVD SKVFSRAILA  180
RTVACIPVNN DDGVLEIGTT EKVEEDIGLI QYARSVFMDQ HGIPIMPTLS GHSTSNPSTH  240
INQHPSQIKM EKHIHGTNVQ PNNLNPEDEH IETEDDEDRI DSETNTENDS CRHLPLDHVG  300
NEQARPNNAQ NNDMMQIETS ESLRDDCTNH VDEEIPMLMV CQNGNLPAQD ELGSWNFLYE  360
DLISSKYQQS SDIVNFISSK HKFFFTLYIH LFFIPAVPQD QAVLAENAHY IETVLTILRH  420
NAHRQAQTAA SSIKTYLALS KNSSFSRWNP KVGTNDIDLQ RMLSSEGAPQ RMLKSILFSA  480
PSSSHRRHRG EAAQSPEPSR DDGEGTGGSR GGQALAELSA SHVVKERQRR EKLNERFIVL  540
RSLVPFVTKM DKASILGDTI EYVKQLRRRI QDLESRARLQ IDGHQTTTRA LAVSKEKRAR  600
STSTAAMEAE TGRKVRAVEA SSSCSTSGGA GKPPAASTEV QVSIIESDAL LELRCPHRDG  660
LLLRVMQALH RELGLEVTSV QASSAGDVLL VELRAKVKEV HGRRSSINEV KRSIHLIISS  720
D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-14521584870Transcription factor MYC2
5gnj_B3e-14521584870Transcription factor MYC2
5gnj_E3e-14521584870Transcription factor MYC2
5gnj_F3e-14521584870Transcription factor MYC2
5gnj_G3e-14521584870Transcription factor MYC2
5gnj_I3e-14521584870Transcription factor MYC2
5gnj_M3e-14521584870Transcription factor MYC2
5gnj_N3e-14521584870Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU578995e-53U57899.1 Zea mays repressor-like protein (in1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022679989.10.0transcription factor TT8
TrEMBLA0A1E5VN500.0A0A1E5VN50_9POAL; Basic helix-loop-helix protein A
STRINGSi029106m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88633036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.16e-61bHLH family protein