PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012525.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | TCP | ||||||||
Protein Properties | Length: 237aa MW: 24854.1 Da PI: 8.4975 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 29.6 | 2.4e-09 | 40 | 71 | 7 | 38 |
TCP 7 rhskihTkvggRdRRvRlsaecaarfFdLqde 38 r ++hTk +gR+RR+ + a+caar+ L++ Do012525.1 40 RYRDRHTKMEGRGRRILMAAPCAARVARLTRG 71 678***************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.0E-5 | 42 | 70 | IPR005333 | Transcription factor, TCP |
Pfam | PF14215 | 6.5E-20 | 117 | 237 | IPR025610 | Transcription factor MYC/MYB N-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MLLRPAAGLL LRLAHIFVEP MPVEFPGGGL QLANPRPAPR YRDRHTKMEG RGRRILMAAP 60 CAARVARLTR GGGGGGGGGT DAGLFAAVLG RDTAHHLATT PPHLDALAAS AAAPAELQAR 120 LQHLVERSGG VWTYDIFWQE SRGAGGGGCA VLGWGDGHCR DGAWGPHDAA AVKEERSAAR 180 KRALLRLHAL YGGGDDDEGA DYTLRLDRFT GAEMYFLASM YFSSPEGAGG PGHALAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 1e-13 | 117 | 235 | 9 | 127 | Transcription factor MYC3 |
4rqw_B | 1e-13 | 117 | 235 | 9 | 127 | Transcription factor MYC3 |
4rs9_A | 1e-13 | 117 | 235 | 9 | 127 | Transcription factor MYC3 |
4yz6_A | 1e-13 | 117 | 235 | 9 | 127 | Transcription factor MYC3 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012525.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001150726.2 | 3e-65 | uncharacterized protein LOC100284359 | ||||
TrEMBL | A0A1E5W2D4 | 1e-165 | A0A1E5W2D4_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G159937_P01 | 1e-64 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7385 | 29 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51910.2 | 1e-09 | TCP family protein |