PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012462.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family AP2
Protein Properties Length: 532aa    MW: 55952.6 Da    PI: 4.8251
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012462.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.5e-19104154155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 + y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+++++g
  Do012462.1 104 PSYRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALAIKG 154
                 57*****887.**********843...6***********************9987 PP
2AP256.47.6e-18350399255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg+f+ +e+Aa+a++aa+ +++g
  Do012462.1 350 TYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFDNPEMAARAHDAAAVAIKG 399
                 69****998.**********843...6**********************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.13E-32104163No hitNo description
PfamPF008474.0E-13104154IPR001471AP2/ERF domain
PROSITE profilePS5103224.118105162IPR001471AP2/ERF domain
SMARTSM003805.0E-37105168IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-32105163IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21105163IPR016177DNA-binding domain
PRINTSPR003671.9E-10106117IPR001471AP2/ERF domain
PRINTSPR003671.9E-10128144IPR001471AP2/ERF domain
SMARTSM003808.3E-36350413IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-31350408IPR001471AP2/ERF domain
PROSITE profilePS5103222.339350407IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21350408IPR016177DNA-binding domain
PfamPF008475.2E-11350398IPR001471AP2/ERF domain
CDDcd000187.61E-19351409No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MEADAAHAPT TSSSSTSSST SSSSCLINGT PQEVPKNSKT TNKRKRDSSP DSQEVEANGS  60
TGGHQGDEIS SCCSTDDNAV AGVGNNDAQA AAGKSSSRSG YKHPSYRGVR RRSWGKWVSE  120
IREPRKKSRI WLGTFPTAEM AARAHDVAAL AIKGRAAHLN FPDRAHELPR PASTSPADIQ  180
AAAAQAAAAS EVQCDDAPPS PSPSSSAELP SSPAAHESPD AAACCPETTT ESAGDGGQCQ  240
HDTALFDLPD ILLDLRDGLW WPPVWPAAMA AEEHDGGDVV GMHEPLLSGM EHEHVLPQVS  300
SEGGCTCSDN NSSSIGSLNA SSPSSSDDSG SAAGSKGTNK RPRRDLKHPT YRGVRMRTWG  360
KWVSEIREPR KKSRIWLGTF DNPEMAARAH DAAAVAIKGR AAHLNFPELA HELPRAASAA  420
PKDVQAAAAL AAATLLPASS PVVPSYDADM APDEAVDEQH EQASPDFGIE NAAPLCGGGI  480
GLDLTFLDVP DAPLDFGYML SPLPLPPSYC GSPWDEIADD LCFEEPLLLW QH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-18100407972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012462.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278641e-122KJ727864.1 Zea mays clone pUT5956 AP2-EREBP transcription factor (EREB185) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824727.11e-110ethylene-responsive transcription factor ERF024-like
TrEMBLA0A1E5VNF50.0A0A1E5VNF5_9POAL; Ethylene-responsive transcription factor ERF038
STRINGLPERR04G16890.11e-138(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.16e-40ERF family protein