PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012459.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 381aa    MW: 40954.4 Da    PI: 6.6135
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012459.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-102974146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEd  l++ v+ +G+ +W++I ++  + Rt+k+c++rw +
       Do012459.1 29 KGPWMAEEDAVLLEHVRAHGPCDWSSIRSKGLLPRTGKSCRLRWVN 74
                     79*************************8876677**********87 PP
2Myb_DNA-binding42.31.8e-1385125345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      ++++eE+   +++ +q+G++ W++Ia +++ gRt++++k++w 
       Do012459.1  85 KFSAEEERVVLELQAQFGNK-WARIATYLP-GRTDNDVKNFWS 125
                      79******************.*********.***********5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.5192476IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-182677IPR009057Homeodomain-like
SuperFamilySSF466897.03E-2627124IPR009057Homeodomain-like
SMARTSM007173.9E-92878IPR001005SANT/Myb domain
CDDcd001676.30E-103176No hitNo description
PfamPF139219.3E-103282No hitNo description
PROSITE profilePS5129420.29477132IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-1878130IPR009057Homeodomain-like
SMARTSM007175.2E-1282130IPR001005SANT/Myb domain
PfamPF002499.7E-1285125IPR001005SANT/Myb domain
CDDcd001671.88E-1085124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MARAPGGGRR RGGGGGRRDA AGSGEAVRKG PWMAEEDAVL LEHVRAHGPC DWSSIRSKGL  60
LPRTGKSCRL RWVNKLRPDL KTGCKFSAEE ERVVLELQAQ FGNKWARIAT YLPGRTDNDV  120
KNFWSTRQKR LARLLRAPLP ARSGRNSSAK APAASSLESR PAATVGNDHN EEFAVLCPQR  180
EIASFFIYMN VNALMEMFAV DCHQGPCCPD QVPFGSSSSG VHPCCAATPF MDAQNAALVP  240
YDQASSGLAS FNGALPPFAP ATYSHACSSS SNAAQLLPKL PFGEPSYPLL DYPGMPEGWN  300
MAPGFINAGA MDDLAYQELL PMMAQPAPMV FPFFGTEHAQ GGVKAEPPDA PDFFDDLPPD  360
MFDSLDQVPP PLSPPATSSG F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-262913027126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1614GGRRRGGGG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012459.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6630006e-57AL663000.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034G17, complete sequence.
GenBankAL7316136e-57AL731613.5 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence.
GenBankAP0149606e-57AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126126e-57CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552186e-57CR855218.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0106P14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824013.10.0probable transcription factor MYB58
SwissprotQ0JB891e-105MYB58_ORYSJ; Probable transcription factor MYB58
TrEMBLA0A1E5VNK80.0A0A1E5VNK8_9POAL; Transcription factor GAMYB
STRINGSi012032m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57003357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.13e-60MYB family protein
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]