PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012444.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 539aa    MW: 56339.2 Da    PI: 6.6738
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012444.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS197.39.5e-611635342374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.....sseelaalkl..fsevsPilk 92 
                 ++lL  cA av+sg+l++aq+lL  l elas +gd+++Rlaa+ ++AL +rl    ++  ++++++ + +  +      + +l+  +l  f+evsP++ 
  Do012444.1 163 EQLLNPCAAAVESGNLSRAQHLLYVLGELASFSGDANHRLAAHGLNALGRRLPAaVGPAAAASVRVPSCECPTpvfagAEPRLFRASLikFHEVSPWFA 261
                 689*************************************************99566666666644444433345554333333333379********* PP

        GRAS  93 fshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnv 180
                 + + +aN aI +a+++     + +H++D+++s+G+QWp+Ll++L+  p  + pps+R+T+ g+ ++       +         L ++A+++++++ ++ 
  Do012444.1 262 LPNALANAAIGQAAARGaaepRPLHVVDLGVSHGVQWPTLLESLTRLPggRAPPSVRLTVAGPTATPpapfsASPPGYDFSPHLLRYAKSINLQLAISR 360
                 ***********9987765677889************************656699*******99666588898888899999***************998 PP

        GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                   a +l+++  + +   pgEal+V+l+++l +        ++er ++L+ v++l+P++vv++e +a   +++ + +f+  le  + +++s++a +    
  Do012444.1 361 --AGSLDSV--HGF-AAPGEALVVCLQFRLGHAT------ADERADILNKVRGLNPELVVLSELDAGG-DGTTAGEFTTRLELLWRFLESTSAAF---- 443
                 ..3444444..555.679**********999987......555789*****************99986.77889*****************8886.... PP

        GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + r   Er+ll+ e+   va+  a      e    Wrer+ +aGF++++++++a+++ak+llrk++ +++++     g + l Wk++p+ ++S Wr
  Do012444.1 444 KGRDGEERRLLEAEAGTSVAADAAG-----EGRDAWRERMAAAGFEEAAFGDEAVESAKSLLRKYDgGWEMSASGAAGPVALRWKGQPVSFCSLWR 534
                 6666667777777788888888887.....77789*******************************8888888888999****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098535.527136513IPR005202Transcription factor GRAS
PfamPF035143.3E-58163534IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MSMHISSCKL ACMKPISCHE QEHPELAAST SNNGFDWLED SISFLTEDVD IAGGYGWWSN  60
PAEVQQDDIG SVVAQTLSPP AAPLPTTSSP LAHASPSIAS PAVSSPSEPS SNKKRKSPAN  120
KASSHSGSNQ HRRAEQDRPG GGGKKGGSKG GGAGSDRDMR WAEQLLNPCA AAVESGNLSR  180
AQHLLYVLGE LASFSGDANH RLAAHGLNAL GRRLPAAVGP AAAASVRVPS CECPTPVFAG  240
AEPRLFRASL IKFHEVSPWF ALPNALANAA IGQAAARGAA EPRPLHVVDL GVSHGVQWPT  300
LLESLTRLPG GRAPPSVRLT VAGPTATPPA PFSASPPGYD FSPHLLRYAK SINLQLAISR  360
AGSLDSVHGF AAPGEALVVC LQFRLGHATA DERADILNKV RGLNPELVVL SELDAGGDGT  420
TAGEFTTRLE LLWRFLESTS AAFKGRDGEE RRLLEAEAGT SVAADAAGEG RDAWRERMAA  480
AGFEEAAFGD EAVESAKSLL RKYDGGWEMS ASGAAGPVAL RWKGQPVSFC SLWRPACSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B8e-2916053685475Protein SHORT-ROOT
5b3h_B4e-2916053631421Protein SHORT-ROOT
5b3h_E4e-2916053631421Protein SHORT-ROOT
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021318969.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A1E5VYC70.0A0A1E5VYC7_9POAL; Nodulation-signaling pathway 1 protein
STRINGSb01g032800.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.15e-86GRAS family protein