PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012345.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB_related | ||||||||
Protein Properties | Length: 340aa MW: 36450.8 Da PI: 4.4425 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 16 | 84 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ +++++G +W++Ia++++ gRt++++k+ w+++l Do012345.1 16 KGSWTPEEDMRLIAYIQKYGHAnwralpkqagtfaspssieflsRWSKIAACLP-GRTDNEIKNVWNTHL 84 799*****************99********************************.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.547 | 11 | 88 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.3E-11 | 14 | 47 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-13 | 15 | 86 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.24E-14 | 16 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-7 | 16 | 48 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.62E-11 | 18 | 84 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 59 | 85 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-6 | 60 | 84 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MRKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGTFA SPSSIEFLSR 60 WSKIAACLPG RTDNEIKNVW NTHLKKRVSP PGGEERGAGS KKKKKAAAAA AEVPVVPSPS 120 PSSSTTTTAN CSSGDSGEQQ SDASKEHDEL GLEELKMIPT LDDPGFDFNM LVDMMVDAVP 180 ELYCPAVSVP TSPCASSTSP PAPARPSVDE LLDLPEIDID HELWSIIDGD GADAVAAETP 240 AEPCQQQSNA TEPNAARTTS HGAEGKEWWL EDLEKELGLW GPMEDFYYPM GPQGPLAHPD 300 PLPGMVDDPV SCYFQAGPTP AMLHDPGYSA VVTSSNQMGF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 84 | 104 | KKRVSPPGGEERGAGSKKKKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012345.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF470064 | 1e-64 | AF470064.1 Sorghum bicolor P-type R2R3 Myb protein (Myb6) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824709.1 | 1e-162 | myb-related protein Zm1-like | ||||
TrEMBL | A0A1E5ULK0 | 0.0 | A0A1E5ULK0_9POAL; Myb-related protein Zm1 | ||||
STRING | Pavir.Ga00752.1.p | 1e-159 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79180.1 | 5e-32 | myb domain protein 63 |