PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012345.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 340aa    MW: 36450.8 Da    PI: 4.4425
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012345.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.6e-161684148
                     TSSS-HHHHHHHHHHHHHTTTT......................-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg......................tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l+ +++++G                        +W++Ia++++ gRt++++k+ w+++l
       Do012345.1 16 KGSWTPEEDMRLIAYIQKYGHAnwralpkqagtfaspssieflsRWSKIAACLP-GRTDNEIKNVWNTHL 84
                     799*****************99********************************.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.5471188IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-111447IPR009057Homeodomain-like
SMARTSM007172.2E-131586IPR001005SANT/Myb domain
SuperFamilySSF466891.24E-141685IPR009057Homeodomain-like
PfamPF002491.2E-71648IPR001005SANT/Myb domain
CDDcd001671.62E-111884No hitNo description
Gene3DG3DSA:1.10.10.606.4E-125985IPR009057Homeodomain-like
PfamPF002495.1E-66084IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MRKGRAPCCA KVGLNKGSWT PEEDMRLIAY IQKYGHANWR ALPKQAGTFA SPSSIEFLSR  60
WSKIAACLPG RTDNEIKNVW NTHLKKRVSP PGGEERGAGS KKKKKAAAAA AEVPVVPSPS  120
PSSSTTTTAN CSSGDSGEQQ SDASKEHDEL GLEELKMIPT LDDPGFDFNM LVDMMVDAVP  180
ELYCPAVSVP TSPCASSTSP PAPARPSVDE LLDLPEIDID HELWSIIDGD GADAVAAETP  240
AEPCQQQSNA TEPNAARTTS HGAEGKEWWL EDLEKELGLW GPMEDFYYPM GPQGPLAHPD  300
PLPGMVDDPV SCYFQAGPTP AMLHDPGYSA VVTSSNQMGF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
184104KKRVSPPGGEERGAGSKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012345.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4700641e-64AF470064.1 Sorghum bicolor P-type R2R3 Myb protein (Myb6) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824709.11e-162myb-related protein Zm1-like
TrEMBLA0A1E5ULK00.0A0A1E5ULK0_9POAL; Myb-related protein Zm1
STRINGPavir.Ga00752.1.p1e-159(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.15e-32myb domain protein 63