PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012302.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family RAV
Protein Properties Length: 381aa    MW: 40812.3 Da    PI: 10.3635
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012302.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-1271119155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++ a+++++g
  Do012302.1  71 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGESEAARAYDVAAQRFRG 119
                 89****9888.8*********......44**********89*************98 PP
2B392.72.7e-29201299189
                 EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 f+k+ tpsdv+k++rlv+pk++ae+h            g  + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v F+++  
  Do012302.1 201 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpvaaavtG--ECKGVLLNFEDAVGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRSAG 297
                 89***************************9988877632..34889*************************************************6543 PP

                 SE CS
          B3  88 se 89 
                 ++
  Do012302.1 298 KQ 299
                 33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-2371127No hitNo description
SuperFamilySSF541711.5E-1671127IPR016177DNA-binding domain
PfamPF008478.8E-871119IPR001471AP2/ERF domain
PROSITE profilePS5103219.94172127IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.2E-2072127IPR001471AP2/ERF domain
SMARTSM003801.1E-2672133IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.9E-38191310IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.93E-29199300IPR015300DNA-binding pseudobarrel domain
CDDcd100179.24E-28199302No hitNo description
PROSITE profilePS5086312.858201308IPR003340B3 DNA binding domain
PfamPF023626.1E-26201298IPR003340B3 DNA binding domain
SMARTSM010191.1E-20201307IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MDSTSCLLDD SSSGASTGKK QAPALAAPSS RTLQRVGSGG SAVMDAPEPG AEADSGGAGR  60
VGAVGGKLPS SKYKGVVPQP NGRWGAQIYE RHQRVWLGTF TGESEAARAY DVAAQRFRGR  120
DAVTNFRPLA ESDPESAAEL RFLASRSKAE VVDMLRKHTY LEELAQNRRA FAAASPSPPP  180
KNPASSSPAA ASAAAAREHL FDKTVTPSDV GKLNRLVIPK QHAEKHFPLQ LPVAAAVTGE  240
CKGVLLNFED AVGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDAV GFYRSAGKQL  300
FIDCKVRSKT AAFVNAATAP PPVKAVRLFG VDLLTAPRTT TVAPPEQKEM VAMTNKRARD  360
AITASTPHVV FKKQCIDFVL T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-4819830811118DNA-binding protein RAV1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00025PBMTransfer from AT1G68840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012302.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0419620.0BT041962.2 Zea mays full-length cDNA clone ZM_BFb0089O18 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807648.10.0AP2/ERF and B3 domain-containing protein Os05g0549800
SwissprotQ6L4H40.0Y5498_ORYSJ; AP2/ERF and B3 domain-containing protein Os05g0549800
TrEMBLA0A1E5VP030.0A0A1E5VP03_9POAL; AP2/ERF and B3 domain-containing protein
STRINGSi024576m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-118related to ABI3/VP1 2
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]