PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012297.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 396aa    MW: 41022.3 Da    PI: 9.119
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012297.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP139.82.1e-431052262120
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.kaaksaa.ks 97 
                 ag k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+++  a+s +s a ++ss+ +aa++++ ++
  Do012297.1 105 AGPKRPTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKTDGETIEWLLQQAEPAIVAATGTGTIPANFSsLAVSLRSGATHPSSAsRAAAFHHlPP 203
                 7889*****************************************************************99999999999999888877788888889* PP

         TCP  98 kksqksaasalnlakesrakara 120
                  ++q++ a++l+ ++ ++++ ++
  Do012297.1 204 PHAQHEVAAMLAWNHGHHQQHQQ 226
                 ************99977754443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-37111252IPR005333Transcription factor, TCP
PROSITE profilePS5136928.349111165IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MDAPSSSTST STNSSRSASE QQQHRQHQAV GHQQHHPFYY AVAAGGGAGA TAAANAAGMP  60
PFMGSLAIVQ QAPAPGAGAG EVRLTQAAPA SGSSGGAEKK AVVPAGPKRP TKDRHTKVEG  120
RGRRIRMPAL CAARVFQLTR ELGHKTDGET IEWLLQQAEP AIVAATGTGT IPANFSSLAV  180
SLRSGATHPS SASRAAAFHH LPPPHAQHEV AAMLAWNHGH HQQHQQQFLP PPPQQQAPQD  240
PDAGEFMRKR YRDGADDLFK DGAARQHPED GGGGEAEEHK ARVAPPTAAM WAVAPNSSAA  300
GAFWMQPAWA FGAGAAGSAV QAPLQFMSTR STNNFPGGAT TMDANVGMLA ALNASGSVQH  360
QHQQEQEGQP PEMAQRHRTG AGANGGDAGR GAASPQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012297.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0634320.0BT063432.1 Zea mays full-length cDNA clone ZM_BFc0063A06 mRNA, complete cds.
GenBankKJ7268970.0KJ726897.1 Zea mays clone pUT3442 TCP transcription factor (TCP2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827969.11e-153transcription factor PCF3-like
SwissprotQ53PH25e-91PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A1E5UIP70.0A0A1E5UIP7_9POAL; Transcription factor PCF3
STRINGPavir.Ha00851.1.p1e-146(Panicum virgatum)
STRINGSi026501m1e-146(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-45TCP family protein