PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012292.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family TCP
Protein Properties Length: 409aa    MW: 41261.1 Da    PI: 6.4052
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012292.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP129.33.9e-401012433129
         TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..kaaksaa.ks 97 
                 ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai ++tgt++++a+ +  + s +s a++   +  +aa++ a   
  Do012292.1 101 VAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAILAATGTGTIPANYSsLNISIRSGAAAAA-NpaRAAPFPAlAL 198
                 789*****************************************************************77733333333333222.2353333333233 PP

         TCP  98 kksqksaasalnlakesr...............akarararertrek 129
                 ++ +++aa   ++++ s                +  +a  r+r re+
  Do012292.1 199 HPHHHQAA--PAPHDMSAmmgyhhhllppqqdpSAGDAYMRKRYRED 243
                 33333333..4444433333344444454444433333344444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.31106160IPR017887Transcription factor TCP subgroup
PfamPF036349.0E-36106242IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MDHGGGAGGG GGGGAPSSSN SGGATAAAGG ASGGRGGDHH PFYYAGPAAS NSGVPPQQQP  60
SPFGGSLAIT PVPEQAPPSS AAGADKKALV PAAPAAAGPV VAKRPSKDRH TKVDGRGRRI  120
RMPALCAARV FQLTRELGHK SDGETIEWLL QQAEPAILAA TGTGTIPANY SSLNISIRSG  180
AAAAANPARA APFPALALHP HHHQAAPAPH DMSAMMGYHH HLLPPQQDPS AGDAYMRKRY  240
REDLFKEDDD RQDPNAPKAR EQQAATPPPP PSAAMWAVAP NAAAPSGGFW MLPVSASSAA  300
AARPAEQPMW SFSGGGGGTA TVQAPLQFMS RASYPSNAAG GGGGGGGGMS EPNLGMLAAL  360
NAYNRGSSED QQQHQQPEGE QQHGGDGGGN DEEDGDDSGE ENHGNNSSQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012292.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808168.10.0transcription factor PCF3-like
SwissprotQ53PH21e-71PCF3_ORYSJ; Transcription factor PCF3
TrEMBLA0A1E5V3320.0A0A1E5V332_9POAL; Transcription factor PCF3
STRINGGRMZM2G089638_P011e-150(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP49342652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.13e-45TCP family protein