PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do012220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 175aa MW: 19103.2 Da PI: 8.2784 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 182.1 | 4.1e-56 | 1 | 173 | 49 | 231 |
GRAS 49 Laarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTg 146 ++arl++s+ +ly+ lpp +t+ + + +++a +++f+ +sP++kfsh+taNqaI ea+e+eervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg Do012220.1 1 MSARLVSSCLGLYAPLPPASTAAARlHGRVAAXFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTG 99 579*************8888877775777888899**************************************************************** PP GRAS 147 vgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklv 231 +g+ s e+le+tg+rL++fA++lg+pfef + va++ ++++ +L v ++E +aV++ + h+l+d ++s ++ +L+l+ Do012220.1 100 LGA----SMEALEATGKRLSDFADTLGLPFEFCA-VAEKAGNVDPGKLGVTRREXVAVHWLH--HSLYDVTGSXSN----TLWLI 173 ***....***************************.7*************************9..999988988888....66666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.491 | 1 | 175 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-53 | 1 | 173 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 175 aa Download sequence Send to blast |
MSARLVSSCL GLYAPLPPAS TAAARLHGRV AAXFQVFNGI SPFVKFSHFT ANQAIQEAFE 60 REERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMEALEAT GKRLSDFADT 120 LGLPFEFCAV AEKAGNVDPG KLGVTRREXV AVHWLHHSLY DVTGSXSNTL WLIQR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-92 | 1 | 175 | 67 | 240 | Protein SCARECROW |
5b3h_A | 9e-93 | 1 | 175 | 66 | 239 | Protein SCARECROW |
5b3h_D | 9e-93 | 1 | 175 | 66 | 239 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do012220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF263457 | 0.0 | AF263457.1 Zea mays SCARECROW (SCR) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001168484.1 | 1e-115 | protein SCARECROW | ||||
Swissprot | Q9FUZ7 | 1e-116 | SCR_MAIZE; Protein SCARECROW | ||||
TrEMBL | A0A1E5UKB1 | 1e-123 | A0A1E5UKB1_9POAL; Protein SCARECROW | ||||
STRING | Sb05g001500.1 | 1e-116 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1371 | 38 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54220.1 | 7e-92 | GRAS family protein |
Publications ? help Back to Top | |||
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