PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012094.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 413aa    MW: 42968 Da    PI: 6.5109
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012094.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278.2e-09266313455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L++l+P +    s    Ka +L + ++Y++sLq
  Do012094.1 266 SHSLAERVRREKISERMKLLQDLVPGC----SNVTGKAVMLDEIINYVQSLQ 313
                 8*************************9....66799***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.66E-11260317No hitNo description
SuperFamilySSF474592.49E-15260321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-15262318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529262312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-6266313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10268318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MAHDGFLGGF HDLAWPLAHH AAVAGASGAP FDALQAHVQH ALMGASARAG CEHDAAMGSL  60
VPSRSLSPSS LATAAGGEAA VEVALMEQLA SRLGVSVPSP PSSRYASCYS TPVGSPSKAA  120
AAPFGAPLLA PDAERASRLS YLAASGEMLS RVASSQSLFG ELAPAYVLGA AQQHGSDESS  180
SDGPSRKRKA PGGKSKAKDA VTTATPKEPE TRAKKCKLST ETADEEEEKP AAREAGSDNG  240
KGKEFAAEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP GCSNVTGKAV  300
MLDEIINYVQ SLQRQVEANQ PCTPSASSLL PLPPPVYSLE GSSQALCYAS SQGTATPSAV  360
TSAKSLVTPS IFVNHGIPDH SLEGFQNANS QMGSLWEEDD LQSLVLMGFR GNG
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012094.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0370224e-77BT037022.1 Zea mays full-length cDNA clone ZM_BFb0151M19 mRNA, complete cds.
GenBankBT0636604e-77BT063660.1 Zea mays full-length cDNA clone ZM_BFc0091C03 mRNA, complete cds.
GenBankKJ7268664e-77KJ726866.1 Zea mays clone pUT3407 bHLH transcription factor (bHLH141) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798622.10.0transcription factor BHLH089-like
TrEMBLA0A1E5V1J90.0A0A1E5V1J9_9POAL; Transcription factor bHLH77
STRINGPavir.Ha00788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133132532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.11e-42bHLH family protein