PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012072.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CPP
Protein Properties Length: 360aa    MW: 39985.3 Da    PI: 7.9755
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012072.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.94.9e-1468105340
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                 +k+C Ckks+Clk+YC Cfa g +Cse+C C+ C+Nk+
  Do012072.1  68 CKHCACKKSRCLKLYCPCFAGGGYCSEKCGCQPCFNKD 105
                 89**********************************97 PP
2TCR50.34.8e-16153189339
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++gCnCkks+ClkkYC+C+++g+ Cs  C+C+dC+N 
  Do012072.1 153 RRGCNCKKSSCLKKYCDCYQDGTGCSLFCRCDDCQNP 189
                 589*********************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.3E-1366107IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163430.01267191IPR005172CRC domain
PfamPF036384.6E-1069104IPR005172CRC domain
SMARTSM011147.7E-15151192IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.5E-11154188IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEATPISVKP PSPVPAAPPP AAMEPMDLPT HAAGATEVEP CSMNQLAVAV TPDPKRQKVE  60
EAADGNGCKH CACKKSRCLK LYCPCFAGGG YCSEKCGCQP CFNKDAYAET VQTTRKVLLS  120
RQKRMSLKIN RRSEANAEPM EDAHHSSSST PPRRGCNCKK SSCLKKYCDC YQDGTGCSLF  180
CRCDDCQNPF GKNEGIMAED SKRYLYTGAD LDHSEGEHEF IVERSPRLQS PISKESSFHQ  240
TPPHLRASSR DIHVFPQAMS QWQALPRSWH CSNKRNSNDR GMDDSANYKN SNNDWQLSKP  300
EDSYSISKCV QIMNGMVELS QVEKSVAPDV FLLPGNREIF ISLGGDVRAL WLKRKIQHLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-126918812120Protein lin-54 homolog
5fd3_B9e-126918812120Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012072.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810095.10.0protein tesmin/TSO1-like CXC 3
TrEMBLA0A1E5W0F10.0A0A1E5W0F1_9POAL; Protein tesmin/TSO1-like CXC 3
STRINGPavir.Ca01393.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101592937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22760.12e-44Tesmin/TSO1-like CXC domain-containing protein