PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do012042.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family RAV
Protein Properties Length: 459aa    MW: 50996.1 Da    PI: 9.5365
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do012042.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.7e-123785155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                s++kGV   + +grW A+I+d      r +r++lg+f  +e Aa+a++ a+ +++g
  Do012042.1 37 SRFKGVVPQP-NGRWGAQIYD------RhTRVWLGTFPDEEIAARAYDVAAVRYRG 85
                689***9788.8*********......44*************************98 PP
2B392.92.3e-29152245186
                 EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 f+kv tpsdv+k++rlv+pkk+ae+h           + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL++gD++ F+++ 
  Do012042.1 152 FEKVVTPSDVGKLNRLVVPKKHAETHfplkrepeTTTTGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIAFSRSV 245
                 99*************************998766533444999************************************************9653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.61E-223794No hitNo description
PfamPF008474.9E-63785IPR001471AP2/ERF domain
SuperFamilySSF541713.86E-163794IPR016177DNA-binding domain
SMARTSM003801.6E-243899IPR001471AP2/ERF domain
PROSITE profilePS5103220.9693893IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-203894IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.4E-36148255IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-29150246IPR015300DNA-binding pseudobarrel domain
CDDcd100171.91E-28151258No hitNo description
PROSITE profilePS5086314.607152260IPR003340B3 DNA binding domain
SMARTSM010198.0E-22152260IPR003340B3 DNA binding domain
PfamPF023621.2E-26152251IPR003340B3 DNA binding domain
SuperFamilySSF514452.11E-11350445IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.0E-7391448IPR013781Glycoside hydrolase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MNTMESSTEV AFAFSNSYQE SGADELAALQ LVSRNPSRFK GVVPQPNGRW GAQIYDRHTR  60
VWLGTFPDEE IAARAYDVAA VRYRGRDSIT NFPEERASAG ELAFLAAHSK SEIVDMLRKQ  120
TYAAELRQGL RRGRGMGARA QPTPLWARKL LFEKVVTPSD VGKLNRLVVP KKHAETHFPL  180
KREPETTTTG KGVLLNFEDG EGKVWRFRYS YWNSSQSYVL TKGWSRFVRE KGLRAGDTIA  240
FSRSVYGQDN QLIIDYRKTT RKPEEGTADA IALETRSIKL FGVDIAGGGR ETGEGQGIEI  300
KRARYQIPTH AAKLIYLAVY INSIWWMIVL VVLKTMILSR GCLRAFLLCS LREACDSGLY  360
SMVIMSFLDA SPSSTTSGTP TSAAASMTPA APLADAWLDG VDMFLEHGTP VERYDTLALE  420
LAKHNIRAGN GKLLHLTATP HCRSTKEAAP PEEPKPEPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A7e-4815126013118DNA-binding protein RAV1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo012042.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818627.11e-166AP2/ERF and B3 domain-containing protein Os01g0141000-like
SwissprotQ9AWS01e-118Y1410_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0141000
TrEMBLA0A1E5VZN10.0A0A1E5VZN1_9POAL; Putative AP2/ERF and B3 domain-containing protein
STRINGPavir.Eb00701.1.p1e-178(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.13e-81related to ABI3/VP1 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]