PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011993.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Whirly | ||||||||
Protein Properties | Length: 198aa MW: 21786.8 Da PI: 9.5876 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 112.4 | 3.5e-35 | 74 | 160 | 53 | 139 |
Whirly 53 qsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139 + f+ls+tev++l++l++ esceffhdp++k+s+eG+v+k+l++ Pl sG+fvn++v n+++k+ +++svP++kaefav+r++l+ Do011993.1 74 ELFSLSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKSLSITPLGSDSGYFVNITVLNNVQKTTDRLSVPITKAEFAVMRTALS 160 67**********************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.30.31.10 | 2.2E-7 | 41 | 73 | IPR009044 | ssDNA-binding transcriptional regulator |
SuperFamily | SSF54447 | 4.0E-52 | 47 | 198 | IPR009044 | ssDNA-binding transcriptional regulator |
Pfam | PF08536 | 8.9E-33 | 71 | 157 | IPR013742 | Plant transcription factor |
Gene3D | G3DSA:2.30.31.10 | 3.4E-42 | 74 | 176 | IPR009044 | ssDNA-binding transcriptional regulator |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MLRLSRFLPS ASRRGFDLKE TLWSGSLTFQ QAVSTSAANL DENSSVKKFA SYTVFKGKAA 60 LSIHPILPSF SKIELFSLSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSITPL 120 GSDSGYFVNI TVLNNVQKTT DRLSVPITKA EFAVMRTALS FALPHIMGWD QVLTHHPAPP 180 ASSKPRVERP HPDSEWER |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4kop_A | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_B | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_C | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
4kop_D | 1e-50 | 49 | 175 | 12 | 169 | Single-stranded DNA-binding protein WHY2, mitochondrial |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Single-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011993.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP099133 | 1e-120 | FP099133.1 Phyllostachys edulis cDNA clone: bphyem106m01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004951836.1 | 1e-130 | single-stranded DNA-binding protein WHY2, mitochondrial | ||||
Swissprot | D9J034 | 2e-52 | WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial | ||||
TrEMBL | A0A1E5VBK3 | 1e-142 | A0A1E5VBK3_9POAL; Single-stranded DNA-bindig protein WHY2, mitochondrial | ||||
STRING | Pavir.Ab00418.1.p | 1e-128 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3012 | 38 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71260.1 | 5e-52 | WHIRLY 2 |