PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011989.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 476aa    MW: 51667 Da    PI: 5.1442
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011989.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM921e-28682131128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksgy 82 
                 lp+G++F+P+d+el+ e+L+ k +  +      ++++   i+e  +i++++P++Lp  +k + ++++fF++ +++y  g+rk+r+          ++ +
  Do011989.1  68 LPAGVQFDPSDSELL-EHLQGKSSLLNskshapIDEFIPtIEEKeGICYTHPKNLP-GIKMDGSSLHFFHRVSNAYGCGHRKRRKisgddksvcDEHIR 164
                 799************.889998766553455443333333666668**********.6677889********************867777777655788 PP

         NAM  83 WkatgkdkevlskkgelvglkktLvfykgrapkge...ktdWvmheyrl 128
                 W++tg +k++++++g ++g kk+Lv+y+g++  g+   + +Wvmh+y+l
  Do011989.1 165 WHKTGASKAIYDENGVKKGWKKILVLYRGSKTGGSkidRDNWVMHQYHL 213
                 ***************************99998887344689******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-3253232IPR003441NAC domain
PROSITE profilePS5100527.87968232IPR003441NAC domain
PfamPF023651.8E-1169213IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRSQSSKPRG QSHSWIMTGV GGFVKKIRNA TQLISLRLGE LVAEPYINCP NCKCRIDTSN  60
VSLLWPALPA GVQFDPSDSE LLEHLQGKSS LLNSKSHAPI DEFIPTIEEK EGICYTHPKN  120
LPGIKMDGSS LHFFHRVSNA YGCGHRKRRK ISGDDKSVCD EHIRWHKTGA SKAIYDENGV  180
KKGWKKILVL YRGSKTGGSK IDRDNWVMHQ YHLGATEDEA DGELVISKVF YQLPSKKNDK  240
SEMGDIVVES EASAKIDPRT PKNYPPQPRL PNNSPCDTDQ YTPIQVDQDE EECGTSVCRV  300
KVEAAECSAE LSPAVVVANL PASDELRQPR DAPDVGPEPE APIPAAGYNM DRFHGLPELN  360
TTFPCFGAPS DNISLAGEEG CGASTHSLKV EAAECSAWLA ELSPAVVVEN LPASNEPRQP  420
RDAPDAGPEA SIPVDDSNMD MFHGLPELGT TFPSLAPPSD GISLAVSLSC ASSLFA
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011989.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012703093.20.0SUPPRESSOR OF GAMMA RESPONSE 1
TrEMBLA0A1E5VQ260.0A0A1E5VQ26_9POAL; NAC domain-containing protein 8
STRINGPavir.Ga01597.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.15e-68NAC family protein