PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do011938.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

Dof

Protein Properties

Length: 323aa MW: 33850.7 Da PI: 10.0511

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011938.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	111.4	4.3e-35	39	98	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++al+cprC+stntkfCyynn s++qPry+Ck+Crr WtkGG+lrnvPvGg++rknk++ Do011938.1 39 QDQALNCPRCNSTNTKFCYYNNNSMTQPRYLCKTCRRNWTKGGTLRNVPVGGSSRKNKQQ 98 7899******************************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-24	36	97	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	5.0E-32	40	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	26.729	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MVASPPREEA AARNVKPKPA RQQQTAASGV RESKPRPQQD QALNCPRCNS TNTKFCYYNN 60 NSMTQPRYLC KTCRRNWTKG GTLRNVPVGG SSRKNKQQRA SAAPLAPSAS SSSSSGSEKV 120 NNVITQKLMT MMPTASAMTT TADFSNILTT FMSTGSGFEL PISDHHQLSM PFTPMSLLSN 180 PNSGSGTTPL SVGMLRGGFL DGSSSNYGAA LSNGMAMPFY PPPSFGPMQH WPGMGGSTTD 240 QHTTQLVGPL MQGVEEVKPM AAVAGGGSIN DGGFAAAGWA GGAVQQQVGD DGGSADNNKA 300 SSRSNTNNNG GASASRSMGY YWQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011938.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF117793	1e-54	EF117793.2 Setaria italica clone GB-SIM-002 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004954606.1	2e-94	dof zinc finger protein PBF
Swissprot	O24463	2e-50	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A1E5WL29	0.0	A0A1E5WL29_9POAL; Dof zinc finger protein PBF
STRING	Si019139m	5e-94	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-33	Dof family protein

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]