PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011890.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family C2H2
Protein Properties Length: 766aa    MW: 83834.8 Da    PI: 6.767
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011890.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-056587123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C+ Cgk F r  nL+ H r H
  Do011890.1 65 FVCEVCGKGFQRDQNLQLHRRGH 87
                89******************988 PP
2zf-C2H215.64.6e-05144165223
                 EETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  Cp Cgk++  + +Lk H +t+
  Do011890.1 144 ACPRCGKRYAVQADLKAHAKTC 165
                 6******************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.81E-86487No hitNo description
PROSITE profilePS5015711.6356587IPR007087Zinc finger, C2H2
SMARTSM003550.0146587IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-56587IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
SMARTSM0035593108138IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.7E-5131164IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.81E-8138163No hitNo description
SMARTSM0035590143163IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.663143171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 766 aa     Download sequence    Send to blast
MTPHPTEPET GPPEQTAPGQ PEAALPLAAA APATVKKKRN LPGTPDPDAE VIALSPGTLL  60
ATNRFVCEVC GKGFQRDQNL QLHRRGHNLP WRLRQRGPGA APPRRRVYVC PESGCVHHSP  120
ARALGDLTGI KKHFCRKHGE KRWACPRCGK RYAVQADLKA HAKTCGTREY RCDCGTLFTR  180
RDSFVTHRAF CGALVEETGR VVAPPAPPSP RPPDLEAPEE NVDKDKEKGQ EEEENEDSAV  240
AEVEQPQRVE APAPEVQQRI PSPPPLPQRI PSPPPLPQQP PRRPSPPPLP KEPPRRPSPP  300
PLPKEPQLFP SPLPFPLEQR PVVAVVPNVD EPEVVAETTV TTMTAKLEDE ADQDEDTCFQ  360
EADQYKEAEL EVSNLLDKDT PMLPCFLPSP SEAIGTDGSS TTCGAGGSVS NSIAPSTTAN  420
TFAGLFASAT TSTTSQSRSL RDLIGVDPTF LCLAIGAPSS LFPQTSASNP GSFAPPPAPH  480
MSATALLQKA AEVGASQSSS SFLKEFGLAS SSSSSPPSKQ LPQGRITDNS AQPWHHRSNQ  540
QMGMERHRNH QQREMESSSQ PWHHQSNQQM EMDRHRNHQQ REMESSSQPW HHRSTQQMEM  600
ERLRNNQQRE MESSSQRWHH HRNDQQMDIE RYRGNQQMEM ESSTQRWPHH RSSQQIEMMG  660
LHRSSQQMER ESRAMLSGGL GLGLAYESGN SGLPDLMMGP SPPLFGPKPA TLDFLGLGIG  720
GTMGGSTANG GLPALMVGGE LDMGSSAQVP ASWEDANRKT NGRTIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-29139201365Zinc finger protein JACKDAW
5b3h_F2e-29139201365Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0663580.0BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802400.10.0protein indeterminate-domain 1-like
TrEMBLA0A1E5VQB00.0A0A1E5VQB0_9POAL; Zinc finger protein MAGPIE
STRINGPavir.Bb03216.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118292836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-89C2H2 family protein