PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011814.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB
Protein Properties Length: 301aa    MW: 33263.1 Da    PI: 5.2269
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011814.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-173077148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++++ +G g+W++ ar  g++Rt+k+c++rw++yl
       Do011814.1 30 RGPWTVDEDLTLINYIADHGEGRWNALARAAGLKRTGKSCRLRWLNYL 77
                     89********************************************97 PP

2Myb_DNA-binding51.32.7e-1683126146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T++E++l++d++ ++G++ W++Ia+ ++ gRt++++k++w++
       Do011814.1  83 RGDFTADEQLLILDLHSRWGNR-WSKIAAQLP-GRTDNEIKNYWRT 126
                      899*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.9352577IPR017930Myb domain
SuperFamilySSF466897.49E-3028124IPR009057Homeodomain-like
SMARTSM007176.3E-152979IPR001005SANT/Myb domain
PfamPF002496.9E-163077IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-223184IPR009057Homeodomain-like
CDDcd001672.08E-103277No hitNo description
PROSITE profilePS5129423.02178132IPR017930Myb domain
SMARTSM007171.9E-1482130IPR001005SANT/Myb domain
PfamPF002496.9E-1583126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2385131IPR009057Homeodomain-like
CDDcd001676.84E-1086126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMAMAATKQE PEREREEEAA EEGGGTELRR GPWTVDEDLT LINYIADHGE GRWNALARAA  60
GLKRTGKSCR LRWLNYLRPD VKRGDFTADE QLLILDLHSR WGNRWSKIAA QLPGRTDNEI  120
KNYWRTRVQK HAKQLNCDVN SKRFKDAMRF LWMPRLAERA AAQHAAGGGG GDVSALTMAA  180
ATATNTGAAS MEMANDEYCS PSSVVTTTTS SSSSLTSEST THDDKAAMPA VNGDWAAMQC  240
ADHEFWSTAS ALQQLTAAGA DHQLLFQADL PLQDLSGWVQ GFSEGVSPEI LWSLDDIWRM  300
Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-262712424120MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011814.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284140.0KJ728414.1 Zea mays clone pUT6719 MYB transcription factor (MYB4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827780.11e-132transcription factor JAMYB-like
SwissprotQ2QZJ81e-113JAMYB_ORYSJ; Transcription factor JAMYB
TrEMBLA0A1E5VQK80.0A0A1E5VQK8_9POAL; Transcription factor MYB108
STRINGSi026574m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.13e-72myb domain protein 112
Publications ? help Back to Top
  1. Ahn IP,Kim S,Kang S,Suh SC,Lee YH
    Rice Defense Mechanisms Against Cochliobolus miyabeanus and Magnaporthe grisea Are Distinct.
    Phytopathology, 2005. 95(11): p. 1248-55
    [PMID:18943354]
  2. Campos-Soriano L,García-Martínez J,San Segundo B
    The arbuscular mycorrhizal symbiosis promotes the systemic induction of regulatory defence-related genes in rice leaves and confers resistance to pathogen infection.
    Mol. Plant Pathol., 2012. 13(6): p. 579-92
    [PMID:22212404]
  3. Yokotani N, et al.
    Role of the rice transcription factor JAmyb in abiotic stress response.
    J. Plant Res., 2013. 126(1): p. 131-9
    [PMID:22847900]
  4. Wang D, et al.
    Expression analysis of innate immunity related genes in the true/field blast resistance gene-mediated defence response.
    Biotechnol. Biotechnol. Equip., 2014. 28(6): p. 999-1007
    [PMID:26740780]
  5. Fred AK,Kiswara G,Yi G,Kim KM
    Screening Rice Cultivars for Resistance to Bacterial Leaf Blight.
    J. Microbiol. Biotechnol., 2016. 26(5): p. 938-45
    [PMID:26869604]