PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011705.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family ARF
Protein Properties Length: 707aa    MW: 75372.5 Da    PI: 7.439
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011705.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.3e-23158259199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f k+lt+sd+++ g +++p+ +ae++        +++ +s  +  +d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD++vF   + ++++ 
  Do011705.1 158 FAKTLTQSDANNGGGFSVPRFCAETIfpeldyrAEPPVQS--VYARDVHGVEWTFRHIYRGTPRRHLLTTGWSNFVNKKKLLAGDSIVFL--RGENGRV 252
                 89*********************999****9976666675..************************************************..4489999 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +v+++r+
  Do011705.1 253 HVGLRRA 259
                 ***9996 PP
2Auxin_resp109.43.8e-36313396183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++Fevv++Prast+eF+v+++ v+++++v++++GmRfkmafetedss++++ +Gt++gv+++d+  Wp+S+Wr+L+
  Do011705.1 313 AARLAAAGQPFEVVHYPRASTPEFCVRAAAVRASMQVPWCPGMRFKMAFETEDSSRISWfMGTISGVKAADSACWPQSPWRLLQ 396
                 678999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-29150261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-35151261IPR015300DNA-binding pseudobarrel domain
CDDcd100178.96E-21157258No hitNo description
SMARTSM010195.6E-21158260IPR003340B3 DNA binding domain
PfamPF023626.8E-21158259IPR003340B3 DNA binding domain
PROSITE profilePS5086312.647158260IPR003340B3 DNA binding domain
PfamPF065071.7E-31313396IPR010525Auxin response factor
PROSITE profilePS5174514.841643707IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MSAAACAPTR VGMLTFAADR MAPPPPLPAP APVVEEVVIE GGGAAGGEGC VNAQLWLACA  60
GSMCTVPPVG AAVYYFPQGH AEQASAAVDL PAAAAMRLPP FVACRVVAVR FMAEPLTDEV  120
FAKIRLVPLR PGEPVADVGD AAAGGGGDDK QQHKPASFAK TLTQSDANNG GGFSVPRFCA  180
ETIFPELDYR AEPPVQSVYA RDVHGVEWTF RHIYRGTPRR HLLTTGWSNF VNKKKLLAGD  240
SIVFLRGENG RVHVGLRRAK RAFCVGGGGD EGAASLSGWG DTYGPLVRGN ATGPGCGARS  300
PSGKVPPEDV VAAARLAAAG QPFEVVHYPR ASTPEFCVRA AAVRASMQVP WCPGMRFKMA  360
FETEDSSRIS WFMGTISGVK AADSACWPQS PWRLLQVTWD EPELLHNVMR VCPWLVEQVS  420
SMPNLHLPNF APSPSPHKKP RIQEFPFKGQ PPLFDPAFPP AQPLPLAPHP HPHHDQNHHG  480
GFIPFFPFPD GSAAAGIQGA RHAQVAPFFS DLHISNLQQS LLLCGVRPAD HHAPPAPRIS  540
TNLAIGNPPP RRDAPRSPSA GAKNADDVKP EGIMLFGRAI LTEEQMKKNS SGVPTSPGAT  600
KNGSTKPDRD AEKSPNTPDG YGSGVTEGSP TKNNLWSEFG LEPGQCKVFA ESDAVGRNLD  660
LSALGSYEEL CARLSAMFRV DDADLRSHVL YRTAAGEVKH VGDEPFR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-742941729388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011705.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978138.40.0auxin response factor 10
SwissprotQ01I350.0ARFJ_ORYSI; Auxin response factor 10
SwissprotQ7XKK60.0ARFJ_ORYSJ; Auxin response factor 10
TrEMBLA0A1E5VQW10.0A0A1E5VQW1_9POAL; Auxin response factor
STRINGSi009541m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-172auxin response factor 16