PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011657.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 171aa    MW: 18886.8 Da    PI: 9.6352
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011657.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.96.4e-1595141347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 
                      +WT+eE+ +++d+ +qlG+g+W+ I++  g  + Rt+ q+ s+ qky
       Do011657.1  95 PWTEEEHRKFLDGLRQLGKGDWRGISNSKGfvTSRTATQVASHAQKY 141
                      7*********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.06188146IPR017930Myb domain
SMARTSM007172.2E-892144IPR001005SANT/Myb domain
SuperFamilySSF466892.02E-1693146IPR009057Homeodomain-like
TIGRFAMsTIGR015578.0E-1694145IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-1095140IPR009057Homeodomain-like
CDDcd001677.93E-1095142No hitNo description
PfamPF002497.0E-1295141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MAKSAVARQP GDHAAADLLR ENVANHLEAD DNGGGRSFPW LTCLGFLFLT FYTAMAIIRS  60
KEDRMAVASV VFLCADLMAL FVCLKMYERA PAGIPWTEEE HRKFLDGLRQ LGKGDWRGIS  120
NSKGFVTSRT ATQVASHAQK YFLRQTNPGM KKRRASLIDV CLLSQTATSA S
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011657.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9612252e-70EU961225.1 Zea mays clone 233639 mcb1 protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104643043
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-28MYB family protein