PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011577.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 325aa    MW: 35495.4 Da    PI: 8.6327
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011577.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH567.3e-18168217255
                 HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 r +h++ E+rRR++iN++f+ Lre+lP++    ++K +Ka+ L +++eYI+ Lq
  Do011577.1 168 RSKHSATEQRRRSKINDRFQILREILPQN----DQKRDKASFLLEVIEYIRFLQ 217
                 889*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.9E-24165238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-19166241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.888166216IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.30E-16168221No hitNo description
PfamPF000102.4E-15168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-13172222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
LQPLDRPSSQ SPPPPPSRPA AEKPLRQHAL PGGIGTFSIS RVAAAAAADQ PGAAVKQEQP  60
PFAVWGQPDP RGHPWSLPFA AHCVAVASTR PEPQQQQHQK RPTERKAGGG FMDAGSRSSG  120
GAGFDDDDGL AARREVSSTL KELSVRVEAK GGSCSGSAGT DQLPNTPRSK HSATEQRRRS  180
KINDRFQILR EILPQNDQKR DKASFLLEVI EYIRFLQEKV QKYEVSHPEW NQENAKIMPW  240
SNIYFRSSWK NSQNKDEING DTVSDPSQVI KNGSSPQFPF AAKPEEHNNA GAFETASGAQ  300
ELAEPKACVP FKQTETPSNV TSMLC
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004973763.11e-177transcription factor BIM1
RefseqXP_025822754.11e-177transcription factor BIM1-like isoform X1
TrEMBLA0A1E5VTM90.0A0A1E5VTM9_9POAL; Transcription factor BIM2 (Fragment)
STRINGSi013622m1e-176(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76237128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.36e-37bHLH family protein