PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011575.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 252aa MW: 26375.5 Da PI: 7.2107 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.8 | 2.4e-38 | 49 | 106 | 4 | 61 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 + +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGgg+rk+ +s Do011575.1 49 EGDPCPRCESRDTKFCYYNNYNTSQPRHFCKGCRRYWTKGGTLRNVPVGGGTRKKPSS 106 6789**************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-25 | 49 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.425 | 51 | 105 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.8E-32 | 52 | 103 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 53 | 89 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MQEVAAEPGR GRAAQQQQFA GVDLRRPKGY AAPVVSQAAT AARAATPAEG DPCPRCESRD 60 TKFCYYNNYN TSQPRHFCKG CRRYWTKGGT LRNVPVGGGT RKKPSSSPSA YAAAANADKP 120 KKPSKKKRRV VVAAQDQEPA AAADTVVAAA PAADSAKTAK IETATPTTTD PASEITTEIV 180 VPAAAEEEDS LAHLLQPDVA LGLGISDFSA GKGLDVLEPD SFEWPAAFDL GTCWGSAGFA 240 DPDPAGLFLN LP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 128 | KKKRR |
2 | 124 | 129 | KKKRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011575.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU965859 | 2e-80 | EU965859.1 Zea mays clone 289437 dof zinc finger protein MNB1A mRNA, complete cds. | |||
GenBank | EU969388 | 2e-80 | EU969388.1 Zea mays clone 329608 dof zinc finger protein MNB1A mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822538.1 | 1e-109 | dof zinc finger protein MNB1A-like | ||||
Swissprot | P38564 | 2e-77 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A1E5VTN3 | 0.0 | A0A1E5VTN3_9POAL; Dof zinc finger protein MNB1A | ||||
STRING | Sb07g028850.1 | 2e-83 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51700.1 | 2e-27 | DOF zinc finger protein 1 |
Publications ? help Back to Top | |||
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