PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011481.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 702aa    MW: 73288.1 Da    PI: 6.4302
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011481.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.6e-15576623355
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +ah+  E+rRR++iN+++ +L++l+P +      K + +++L ++++YIksLq
  Do011481.1 576 EAHSLTEKRRRSKINDKLRTLQQLVPGC-----DKSNQVSTLDQTIQYIKSLQ 623
                 68*************************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003537.1240284IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.126573622IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-17574632IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.59E-14576627No hitNo description
Gene3DG3DSA:4.10.280.109.8E-19576631IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-12576623IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-14579628IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 702 aa     Download sequence    Send to blast
LVWQAGAGGS SSMELQPSWV PSSSPAATVA LPPSEDEMLA WLYPIVRGDE LVVTGQGDDR  60
PGDLAGHAAV DDQQAAAPVK EAVGNSREKV DDQQAAPATE EKRRAEPGPA RCSSVTVDSG  120
EATGCGGDGG GAEGFLDMFG DRRSPYRRSL DLVGQGGAGG GSSSMEVQAS HLPSSPAVAA  180
LPPSEDKMAA WLDSIVRGDE LVVTGQDYRP GDLAGHAAVD YQQVAPVKEA AGHHKREKVS  240
TSERRKARKS HHTETHNLAE KSNQVLTLDQ TIQYMKSLQQ QIQAMSFGQA GMKPAAVYPA  300
MPPPYLPPAA AAGRRLMMPP ATAAVAPGVL VRGHVQPGVV LARPPAMLPF GPLLPLVHHP  360
AVVHASAPMP FPAAATAPND FGSAWCHCSK DPDGSGGGED LFGFVSDRHS SCVMSCPTIP  420
VTTHARCIIS PSLLALMVIL CLNCSGDLFE LVWQGHSGVS TEGQPSCRPL SSSSVAVVPE  480
ALVPEPPSEA DMAAWLFPIV CGGECGGEGH NVTTRSATVN DDQIVASVKG SPEKLPATDE  540
KSSEASFVWQ GTAGGSSEKR KQTSTGARWS HSHHAEAHSL TEKRRRSKIN DKLRTLQQLV  600
PGCDKSNQVS TLDQTIQYIK SLQQQIQAMS SGCGTKPAAA GVCLVVQPAP MLPPAAAGLP  660
MMMLPAAAAA PWMLAPGHVR PAGMFLGPPP AAMMVQYGGM LP
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011481.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2T8KLV92e-70A0A2T8KLV9_9POAL; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62832452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.17e-20phytochrome interacting factor 3-like 5