PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011465.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 650aa    MW: 68354.9 Da    PI: 10.167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011465.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10172216244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++W++eEd  l+ +v+++G ++W+ I ++ +  ++Rtl q+  rw
       Do011465.1 172 KAWSKEEDADLAAGVQKYGERNWDDILHKCNfdNTRTLDQLSQRW 216
                      58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.8E-11165221IPR009057Homeodomain-like
PROSITE profilePS500907.863166216IPR017877Myb-like domain
SuperFamilySSF466893.01E-11169226IPR009057Homeodomain-like
SMARTSM007172.1E-7170222IPR001005SANT/Myb domain
PfamPF002493.1E-8172216IPR001005SANT/Myb domain
CDDcd116602.82E-12177221No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MAAPAAGKGK RKRPLSEDDV YLLLHRYAPG TILTALQEVA QHANGRRIDW KAVVRKSATG  60
ITSAREYQML WRHFAYHHEL DDAVDAGEQP LALISGSSRE QASGQRVNLD APVLNCPNEK  120
IARVPSEKQL AQSHRMSNIT GPVSNSKQAS HSGPSPGSLD PNGPSKKKKK PKAWSKEEDA  180
DLAAGVQKYG ERNWDDILHK CNFDNTRTLD QLSQRWALIC KRPGGSTKPA STKQHVTVAS  240
SEERKDALKA LTMAVGPIPR TSSLRSVLTT HATEQVHSDS EVAVVNPPGP STHTLETKKA  300
SSTTPVPVSC DSEEKEDEST FCVITIDDLF PEDAKQPETV DQMAKQPEVA DQKAKQPETV  360
DPKAKQPETA DPKAKQTETA DPKAKQPETA DAKAKQPDTL NPKVEIVDPK DKDMLEFDQF  420
VASQGGLNTD HLDKSKTGRS ALQGQGLVGI QKKQVKLEPT VGKVNPVSAG TPAMGKRTKT  480
PVPHIVNPVP AGTPRGIVGT VNANAPNKTL VRKAATPVPA GAQAPPMKKH AANTKGNQVM  540
QPSIAAVGSG VTTSSQANVA VNGTNKANLP SSSGQASAAV NIGSKVKPPS SGQASAVVNI  600
GGKAKPPSSG QASVAVNGAN RVANPPSSSQ AGAAVSGAAN KANPPAAPKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794563e-94HF679456.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB50 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952835.10.0nascent polypeptide-associated complex subunit alpha, muscle-specific form
TrEMBLA0A1E5VRN40.0A0A1E5VRN4_9POAL; Uncharacterized protein
STRINGSi016260m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58220.11e-27MYB_related family protein