PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011426.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 618aa    MW: 66248.8 Da    PI: 6.4566
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011426.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.59.4e-18191528127
         NAM   8 hPtdeelvveyLkkkvegkklelee..vikevdiykvePwdLpk..........kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkev 92 
                  P d+el+  +L++k++g+ l+++   +++++diy ++P +L            +  +  ++w+fF++ + k+++++rk+r++   +g+W++    ++v
  Do011426.1  19 TPADDELL-GFLRQKLKGEALPAAAgaHFHDADIYAADPATLTLayqpaparkgEQGGPGSSWFFFTCVRPKSSSDSRKSRTVGggAGTWHSERAPRRV 116
                 59******.99*********66643225**************84367777653322224459*******************87755889********** PP

         NAM  93 lskkgelvglkktLvfykg.rapkgektdWvmheyr 127
                 l+ +g+ vg  + + f +   +  +e+tdW m e++
  Do011426.1 117 LDGEGSCVGHSQYFSFKRRtGKGCSERTDWYMVEFS 152
                 **99************9542555668********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.43312177IPR003441NAC domain
SuperFamilySSF1019418.89E-2119177IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MRRPLAAETP QPGDPASSTP ADDELLGFLR QKLKGEALPA AAGAHFHDAD IYAADPATLT  60
LAYQPAPARK GEQGGPGSSW FFFTCVRPKS SSDSRKSRTV GGGAGTWHSE RAPRRVLDGE  120
GSCVGHSQYF SFKRRTGKGC SERTDWYMVE FSEAQEGDHE RVRGGEPALV LCNIYKKHSS  180
SRSSSSSRSA RKRKATEEHV DQSSAPLKAK RRLFEPPAPT PAAASQEQVS SILSIVTSGL  240
YSRGEAAKSL PESSHGLIGC TFDHDQVSHG EIGGTLDHHP IFCSELEASQ GMINSTSNYL  300
KFSPETLQHK MSTTPPSLLI SEPDASQSKI GGTLDDHLRF WAEAEASQSM IDSPSAYLNP  360
SPEPETWKNK TSTAPPCLLM SEPQAAQNKA ALPSLLMSEP ETAQNKATLP SLMMSESKTA  420
QNKATLPSLM MSEPETVQGK IGGTSDYLRF WPEPEASQGM INGTSDYLKT SSETEELQNK  480
TSTTTPPSLS TFKPEVPASQ GKMATFNSGI QVAGGDTSPA PAHCYGTTNL LMIDGYSSGI  540
PLWGRPWSYA SWTANDNVTT LSSCRNLGCT VGAQPTSNLW STAGFASSPN LCSMPSTTLL  600
PPPLSPSPWY GGPVLWSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011426.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961530.11e-179uncharacterized protein LOC101760926 isoform X2
TrEMBLA0A1E5VB500.0A0A1E5VB50_9POAL; Uncharacterized protein
STRINGSi038541m1e-147(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16781612