PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Do011344.1

Organism

Dichanthelium oligosanthes

Taxonomic ID

888268

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium

Family

NAC

Protein Properties

Length: 189aa MW: 21077.9 Da PI: 8.731

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Do011344.1	genome	Dichan	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	55.6	1.8e-17	8	154	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.....kvkaeekew....yfFskrdkkyatgkrknr.atksgyWkatgkd 89 lppG+ F+P+ ee v ++L++ ++g + ++++i++vdiy+ +P L + ++ e++w + + + + + + r +r +++ g W+ ++ Do011344.1 8 LPPGVYFNPSAEECVRDFLRPWIAGVRPGTDRIIDDVDIYSEHPAALVRgrepgLSRGFEHKWflltHCVCLSGGRGRGKVRVKRdVATGGNWRVEQRT 106 79***********************999999**********7445564333345577333334444555555666999977889***** PP NAM 90 kevlskkgel....vglkktLvfy......kgrapkgektdWvmheyr 127 k++ ++++e+ ++t fy kg++ + kt W+m+e + Do011344.1 107 KNIAERDQEEeppgGDRRRTNGFYlgggkgKGKNDGAFKTPWLMEELT 154 *8555567766789999999887777888888*******975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.31E-17	5	170	IPR003441	NAC domain
PROSITE profile	PS51005	22.765	8	181	IPR003441	NAC domain
Pfam	PF02365	1.3E-8	9	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MAGPLQALPP GVYFNPSAEE CVRDFLRPWI AGVRPGTDRI IDDVDIYSEH PAALVRGREP 60 GLSRGFEHKW FLLTHCVCLS GGRGRGKVRV KRDVATGGNW RVEQRTKNIA ERDQEEEPPG 120 GDRRRTNGFY LGGGKGKGKN DGAFKTPWLM EELTTEEEEA AAAGGWRGER IVKVFCKLYV 180 SLLYTSRCV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Do011344.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1E5VS32	1e-136	A0A1E5VS32_9POAL; Uncharacterized protein
STRING	Si011743m	2e-83	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13570	17	24