PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011313.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 432aa    MW: 45838.4 Da    PI: 7.5564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011313.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.28e-053183561255
                 HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Do011313.1 318 RKEKLGDRIAALQQLVSPF-----GKTDTASVLMEAIGYIKFLQ 356
                 7788899*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.674306355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-5316360No hitNo description
SuperFamilySSF474596.8E-11316367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-8320363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MMASSSSSSN LSDHLVQDDL PWPSSSSLPF APAPHSAVIG GGHQWSQQPL TQNCSNHHHS  60
DELEVLLSAQ GHNHSHHHAA SPLVPHHLSS LLMMQDLGLQ WNNCSSFADT SSMPMNGQQV  120
QDGHNKIKEE QPLNSRSSCA AGTAISYHDI VVDGVGGIPT MAAAADLDGT VLPSVNISRP  180
QQKAAWPAAP LPLPGDAFEI LASSRLCKTL LLSQAASVLL HNGGMPLLRS EHVPHGPPAA  240
PAHPHGPSID SYKQQMGACA ARGGGGRHWS ADHDTAACHQ KAARPAVAVV PAHPQAPSLK  300
KPRVESHSST IVPSFKVRKE KLGDRIAALQ QLVSPFGKTD TASVLMEAIG YIKFLQDQVE  360
TLSCPYLKSS RNKNSKPKTA QRGSSNANAN GGEQEETRLD LRSRGLCLVP LSCTSYVTNE  420
NGVWAPPNFG GN
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011313.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9502575e-55EU950257.1 Zea mays clone 484112 mRNA sequence.
GenBankEU9503525e-55EU950352.1 Zea mays clone 489974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816405.10.0transcription factor bHLH110
TrEMBLA0A1E5W4060.0A0A1E5W406_9POAL; Transcription factor bHLH110
STRINGPavir.Ea00834.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72403242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.15e-47bHLH family protein