PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | bHLH | ||||||||
Protein Properties | Length: 475aa MW: 51403 Da PI: 6.5206 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 9e-13 | 307 | 352 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + +++L +Av+YIk+Lq Do011267.1 307 SIAERVRRTKISERIRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 352 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.945 | 301 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.98E-15 | 304 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.69E-13 | 305 | 356 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.5E-14 | 306 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-10 | 307 | 352 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-13 | 307 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0048573 | Biological Process | photoperiodism, flowering | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MYGSPASKDL NRPVQPPMAS SGLLRYRSAP SAVLGELCED FLPPGPRAAS PDAGADNVFS 60 RFLADQHIRD DKPSPPPAPA AVHFPSESDM ASQQQQQMMF HSQHQQQQQE MVDAKSGLYR 120 TVSSGMEPAA AAGTNNLTRQ SSSPAGFLDH LNMDNGYGAM LRAGMSMGFR DGSSTATADS 180 LAGGGGRLKG QLSFSSRQGS LMSQISEMDS EDVGGSSPEA AGGDRGYIPG YPMGSGWEDS 240 SSLMSENLSG MKRPRDSSEP GQNGLTHQFS LPKTSSEMAT IEKFLQFQDA VPCKIRAKRG 300 CATHPRSIAE RVRRTKISER IRKLQELVPN MDKQTNTSDM LDLAVDYIKD LQKQVKGGVL 360 GDLSLMCPEF VQLFLADFGA SGALTSALRF MTKAAFENTR DGFRKGAMSC FFELLYVLAY 420 AFVFPRLPIV KHYRAKAAAE GSLTVMADLA GLLLQESQTM YERIWALAET ENPGS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011267.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU960591 | 1e-167 | EU960591.1 Zea mays clone 226472 DNA binding protein mRNA, complete cds. | |||
GenBank | KJ727749 | 1e-167 | KJ727749.1 Zea mays clone pUT5690 bHLH transcription factor (bHLH90) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804212.1 | 0.0 | transcription factor bHLH130-like | ||||
Refseq | XP_025804213.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | A0A1E5WBM6 | 0.0 | A0A1E5WBM6_9POAL; Transcription factor bHLH130 | ||||
STRING | Pavir.J25484.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1884 | 38 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 1e-57 | bHLH family protein |