PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011188.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 571aa    MW: 63296.1 Da    PI: 4.6172
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011188.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.58.6e-1302025712374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++lL++cA a+s+ +  +aq +++ l++++s +gdp qR+aay++e+Laar++ s++++ykal++++ +   +  +l+a+++++e++P++++++++aN 
  Do011188.1 202 KQLLFDCAAALSEYNIDEAQVIISDLRQMVSIQGDPSQRIAAYLVEGLAARIVASGNGIYKALTCKDPP---TLYQLSAMQILFEICPCFRLGFMAANY 297
                 589*****************************************************************9...89999********************** PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197
                 aIlea +geer+HiiDfdi+qG Q+++L+q L + +++p +lRiTgv++pe++      l+ +g+rL+++Ae +gv+fef++ v  +l d+++ +L+++
  Do011188.1 298 AILEACKGEERLHIIDFDINQGSQYITLIQFLKNNANKPRHLRITGVDDPETVqrPIGGLKVIGQRLEQLAEDCGVSFEFRA-VGANLGDVTPAMLDCR 395
                 ***************************************************99878899***********************.799************* PP

        GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296
                 pgEal+Vn+++qlh+l+desvs+ +erd++L++vk+l+Pk+v++veq+a++n+++Fl+rf e  +yysalfdsl+a+lpres +r++vEr++l+reivn
  Do011188.1 396 PGEALVVNFAFQLHHLPDESVSIMNERDQLLRMVKGLQPKLVTLVEQDANTNTAPFLTRFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVN 494
                 *************************************************************************************************** PP

        GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 ++aceg +r+er e ++kWr+r+++aGF+p p+++++ + +k++l+ + ++ y+ ee++g l +gW +++L++ SaW+
  Do011188.1 495 ILACEGPDRVERYEVAGKWRARMTMAGFTPCPFNSHVISGIKSVLKSYCDR-YKFEEDHGGLHFGWGEKTLIVSSAWQ 571
                 ************************************************966.*************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.722175552IPR005202Transcription factor GRAS
PfamPF035143.0E-127202571IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MSFVRRADPA TAYTDNLYIH KFATPGSNFA ARRFSSDTQL FRYGTEPYNG EYGHMGFTGS  60
PSGAFQNSFC SQQASLTPYH VTADGRSPSV ADTQSNSCSD AAKDSPVVSN VSQQNSQSVS  120
DSQSSEIEVE FDEDEVRLKL QELEQALFDE GDDILFEISQ AGSINDEWAD PMKNVLLPNS  180
PKESESSISC AVSNSGAARS PKQLLFDCAA ALSEYNIDEA QVIISDLRQM VSIQGDPSQR  240
IAAYLVEGLA ARIVASGNGI YKALTCKDPP TLYQLSAMQI LFEICPCFRL GFMAANYAIL  300
EACKGEERLH IIDFDINQGS QYITLIQFLK NNANKPRHLR ITGVDDPETV QRPIGGLKVI  360
GQRLEQLAED CGVSFEFRAV GANLGDVTPA MLDCRPGEAL VVNFAFQLHH LPDESVSIMN  420
ERDQLLRMVK GLQPKLVTLV EQDANTNTAP FLTRFREVYD YYSALFDSLD ATLPRESPDR  480
MNVERQCLAR EIVNILACEG PDRVERYEVA GKWRARMTMA GFTPCPFNSH VISGIKSVLK  540
SYCDRYKFEE DHGGLHFGWG EKTLIVSSAW Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-6020857026378Protein SCARECROW
5b3h_A9e-6120857025377Protein SCARECROW
5b3h_D9e-6120857025377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011188.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5347040.0EF534704.1 Aeluropus littoralis scarecrow gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819107.10.0scarecrow-like protein 1 isoform X1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A1E5VXS70.0A0A1E5VXS7_9POAL; Scarecrow-like protein 1
STRINGSi000832m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51753860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]