PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011162.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GATA
Protein Properties Length: 357aa    MW: 39473.1 Da    PI: 7.4034
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011162.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.12.9e-14107140132
        GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrk 32 
                 C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk
  Do011162.1 107 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRK 140
                 6667777777***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.3E-5100154IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.04E-9103142No hitNo description
Gene3DG3DSA:3.30.50.104.6E-10106140IPR013088Zinc finger, NHR/GATA-type
PfamPF003207.4E-12107140IPR000679Zinc finger, GATA-type
CDDcd002025.16E-7117140No hitNo description
PROSITE profilePS509669.916246293IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-5263292IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-6268295IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MVVSSPVSLT VRRDCLSGYP LLGFSLLLLF TPRLLARGVK VTPTSVTIVP CLGPPEGEQG  60
GDAMMHMLVA PDGGGGELQA YNAPPVEQEL ELLRDNADDG LEGHVRCLRC GISGNATPHM  120
RRGPDGPRTL CNACGIAYRK VKPCSYVPEQ SSESFSSILK KFLNPQLDLL SFFKHYERAV  180
DEHRYAELQA DFQASQSYPR IPPAKMLKQT AHTYTPVVFE IFRKEFELFM DSVLFSCGEA  240
GTTSEYKVAS SEKPKEHFVR FDSSDCSCVC TCRKFEFMGI PCCHMLKVLD YRNIKEVPQK  300
YLLKRWRRTA KSANEDSEGN ATNANGSSLN VPAPAANHHG LQSFSAMIQD ASVSSMQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0558180.0BT055818.1 Zea mays full-length cDNA clone ZM_BFb0212N15 mRNA, complete cds.
GenBankHQ8587820.0HQ858782.1 Zea mays clone UT1768 FAR1 transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958302.11e-139protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1E5V9R70.0A0A1E5V9R7_9POAL; Uncharacterized protein
STRINGPavir.Ba00417.1.p1e-137(Panicum virgatum)
STRINGSb02g039200.11e-140(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-24FAR1-related sequence 5