PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011143.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | Dof | ||||||||
Protein Properties | Length: 340aa MW: 36020.7 Da PI: 8.4562 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 117 | 7.5e-37 | 188 | 249 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC+stntkfCyynnysl+q ryfCk CrryWt+GG+l+n+PvGgg+rknk+sss Do011143.1 188 KEKALNCPRCNSTNTKFCYYNNYSLQQVRYFCKMCRRYWTEGGSLQNIPVGGGSRKNKRSSS 249 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02458 | 6.3E-6 | 2 | 102 | IPR003480 | Transferase |
Gene3D | G3DSA:3.30.559.10 | 6.7E-13 | 2 | 100 | IPR023213 | Chloramphenicol acetyltransferase-like domain |
ProDom | PD007478 | 4.0E-29 | 184 | 246 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.5E-30 | 190 | 246 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.167 | 192 | 246 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 194 | 230 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0016747 | Molecular Function | transferase activity, transferring acyl groups other than amino-acyl groups |
Sequence ? help Back to Top |
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Protein Sequence Length: 340 aa Download sequence Send to blast |
MPNYIGNVTT FAIREASVDE VQRMALPDVA AMVREAITAP AYDEHFQELV DWVEEHKAGR 60 YVETASLGLG SPTVSVTAFT SFPIDTDFGF GYAAMAMPTT TSTLKSKGSS QFQFLFGCTN 120 CGIQYYEEFE HYISFSILST ANTGQGGSNP NLPVLAPSSV PGGSALHGGV PQAVAGAGST 180 ERRARPQKEK ALNCPRCNST NTKFCYYNNY SLQQVRYFCK MCRRYWTEGG SLQNIPVGGG 240 SRKNKRSSSS SASASTSASV TSSSMASTAG RRPRTLYLAL IPLVVLLARG LLALPLIRIW 300 EGGRDGVGFV PVVGGASPAA RVEAPPAYGG GDGATPPCGC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011143.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC582413 | 1e-108 | KC582413.1 Sorghum bicolor dof20 protein (dof20) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1E5W8P3 | 0.0 | A0A1E5W8P3_9POAL; Dof zinc finger protein DOF4.6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24060.1 | 8e-37 | Dof family protein |