PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do011030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 985aa MW: 110674 Da PI: 4.9233 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.1 | 9.9e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Do011030.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 32.8 | 1.6e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Do011030.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-18 | 5 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF13921 | 4.6E-13 | 10 | 70 | No hit | No description |
CDD | cd00167 | 6.21E-12 | 10 | 53 | No hit | No description |
SuperFamily | SSF46689 | 6.47E-21 | 33 | 108 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.86E-30 | 55 | 106 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.4E-14 | 57 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.0E-58 | 406 | 659 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 985 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRHR KRKRKGIDYN AEIPFEKQPP PGFYDTVGED RPLEHVQFPT 240 TIEELEGKRR ADIEAQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT RRSKLMLPPP 300 QISDHELEEI AKMGNAGDPG LAEELGEGST ATRTLLASYS QTPRLGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLALASPG 420 PGVTPRIGMT PSRDGHTFGL TPKATPFRDE LRINEEVEMQ DGTKLELRRQ AELRRSLQSG 480 FASIPQPKNE YQIVMPPITE DEKEEAEEKI EEDMSDRMAR ERAEEQARQE ALLRKRSKVL 540 QRSLPRPPTA SVEIIRQSLI RSGESRSRST FVPPTSLEEA DELINEELLR LLEHDNAKYP 600 LDEKTQKEKK KGSKRQQNGG SLVPEIDDFD EDELKEAGSM VEEEIQYLRV AMGHENESFE 660 DFVKAHGACQ EDLMFFPNNN SYGLASVAGN ADKISALQNE FEIVKKRMDD EAKKASRLEQ 720 KIKLLTQGYQ VRAGKLWSQV QDTFKQMDTA STELECFQEL QKQEHLAASY RILNLTEEVN 780 KQKALERTLQ SRYGDLLSGF QRIQEQLEEH KRQLKVQEAI EAEKRAQEEE VAAQNRAAEE 840 EERKSHSDEE EGGQTNRATD GEAAGSKGTT EDQMDVDRGN VDGEFVGPIP PARDTEGDND 900 EVSIQENTSN AQSSGSASTN DGAEKIDPAK PEGQDKADDS MAVDAGHQEE GKDELPNAGA 960 SISAGNTAVS SDQAVSNEDN GKAPE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 797 | 3 | 792 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KRRELKAAGIDTRHRKRKRK |
2 | 199 | 204 | RKRKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do011030.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF458962 | 0.0 | AF458962.1 Zea mays CDC5 protein (CDC5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004962961.1 | 0.0 | cell division cycle 5-like protein | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | K3Z3H8 | 0.0 | K3Z3H8_SETIT; Uncharacterized protein | ||||
STRING | Si021096m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4416 | 35 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Publications ? help Back to Top | |||
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