PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do011026.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family LBD
Protein Properties Length: 319aa    MW: 34171.2 Da    PI: 6.3666
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do011026.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.31.2e-38541541101
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+s+++k+l+++++e+  dam++l++++eara dPv G+v++i +lq q+++++ ela++k+
  Do011026.1  54 ACAACKYQRRKCNADCPLAPYFPADQQRRFLNAHRLFGVSKIQKTLRRIDPERGADAMRTLIFQSEARAADPVGGCVSIIEALQGQIDRTQLELAYVKQ 152
                 7*************************************************************************************************9 PP

      DUF260 100 el 101
                 ++
  Do011026.1 153 QI 154
                 86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.76353154IPR004883Lateral organ boundaries, LOB
PfamPF031957.1E-3754151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MSSPPSSKTP PHLRLHVDTT TAATTNGSAA SPGSASSSHS SRSPRPSGGG QNQACAACKY  60
QRRKCNADCP LAPYFPADQQ RRFLNAHRLF GVSKIQKTLR RIDPERGADA MRTLIFQSEA  120
RAADPVGGCV SIIEALQGQI DRTQLELAYV KQQIAIYRQA AATAPLADPT AVVGQDNAVA  180
VDALYAGQEP VPAAAGLVFH DQQGYHALKV VDDQNHPPPQ QLYNYLPYNG TTTGDEQYGF  240
ANSSVGSLVS LAEKLEQHCQ VEAAPLVDAF DIKPQPMPGH QEEKLAAVLK HNVDQHMEEM  300
EEPATAAAAP CHLELGFSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-25461473104LOB family transfactor Ramosa2.1
5ly0_B1e-25461473104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo011026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0053883e-58AP005388.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04.
GenBankAP0149643e-58AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankCP0126163e-58CP012616.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 8 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680048.13e-97LOB domain-containing protein 6-like
TrEMBLA0A1E5W2A00.0A0A1E5W2A0_9POAL; LOB domain-containing protein 22
STRINGPavir.Ba02946.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52283461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-39LOB domain-containing protein 22