PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010926.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family NAC
Protein Properties Length: 304aa    MW: 33276.6 Da    PI: 9.6128
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010926.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.28.5e-33612031128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tks 80 
                 lp+G++F+Ptd+el+ e+L+ k++ ++      +   +    +i+   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+          +
  Do010926.1  61 LPAGVKFDPTDQELL-EHLEGKARPDSrklhplV---DefipTIEGEnGICYTHPERLP-GVSKDGLVRHFFHRPSKAYTTGTRKRRKvhsvdgddGGE 154
                 799************.99****998885665442...133333665557**********.555666688******************845555544337 PP

         NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  +W++tgk+++vls +g+  g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Do010926.1 155 TRWHKTGKTRPVLS-NGRPRGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 203
                 78************.999***********6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3852222IPR003441NAC domain
PROSITE profilePS5100532.77661222IPR003441NAC domain
PfamPF023651.2E-1462203IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTWCNGFNDV RAAVESSLSP AAAAGKKAAA SLAVLVKMCP SCGHRAQYEK ETTTIQDLPG  60
LPAGVKFDPT DQELLEHLEG KARPDSRKLH PLVDEFIPTI EGENGICYTH PERLPGVSKD  120
GLVRHFFHRP SKAYTTGTRK RRKVHSVDGD DGGETRWHKT GKTRPVLSNG RPRGYKKILV  180
LYTNYGKQRK PEKTNWVMHQ YHLGSDEEER DGELVVSKVF FQTQPRQCGS TAAKEAVVAN  240
NNALAGHQHP GGVLREANGF DQFYSTGAMI GYGQGVPNRA PPAPAAPHFM PSFAVHAARA  300
SFGP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010926.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0655440.0BT065544.2 Zea mays full-length cDNA clone ZM_BFb0229C22 mRNA, complete cds.
GenBankJX4285320.0JX428532.1 Zea mays subsp. mays clone pUT3132 NAC87 NAC type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961226.11e-174NAC domain-containing protein 73
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A1E5VZX80.0A0A1E5VZX8_9POAL; NAC domain-containing protein 73
STRINGPavir.Ca00926.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-118NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]