PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010880.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family MYB_related
Protein Properties Length: 322aa    MW: 34353.7 Da    PI: 6.0738
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010880.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding574.3e-181465147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +g+WT+eEde+lv ++k++G g+W+t ++         gRt++++k++w+++
       Do010880.1 14 KGPWTPEEDEKLVAYIKKHGQGNWRTLPKNAAiaarlPGRTDNEIKNYWNTH 65
                     79********************9987666555555555************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-24574IPR009057Homeodomain-like
SuperFamilySSF466896.68E-17976IPR009057Homeodomain-like
PROSITE profilePS5129424.142970IPR017930Myb domain
SMARTSM007179.2E-161368IPR001005SANT/Myb domain
PfamPF002491.5E-151465IPR001005SANT/Myb domain
CDDcd001676.91E-171666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MGRAPCCEKS GLKKGPWTPE EDEKLVAYIK KHGQGNWRTL PKNAAIAARL PGRTDNEIKN  60
YWNTHIRKRL LRMGIDPVTH APRLDLLDLS ALLKPAAYYP TQADLDTLRA FEPLASYPDL  120
LRLASALLSG GSPAAPTTIG DQQQLLPWLL QAQMAQAAAG MAQQAAVAPP QQADHQFMQQ  180
QQQAAGAACQ MPDLVHATSP TLAQQLAAAA QQQHHQAQDM AAVACDSMQP PTCYVDSLDV  240
PALMQMVQQP DASNLQQWSS TVTSSNNNNV GSGVSTPSSS PVAGLNHSAS TVTTYGGASA  300
SSDAAALFSM QLSELLDVSD YM
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2485791e-104AK248579.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf97l09, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025802158.11e-137transcription factor MYB102-like
TrEMBLA0A1E5WDE70.0A0A1E5WDE7_9POAL; Uncharacterized protein
STRINGPavir.J38204.1.p1e-132(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-40MYB-like 102