PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010835.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family CO-like
Protein Properties Length: 376aa    MW: 40011.8 Da    PI: 6.1466
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010835.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.6e-0756101342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  + C+ +e  ++   C+ +   lC+ C   +H        H +vp+
  Do010835.1  56 VWLCEVCELAPAAVTCKADAAVLCAACDADIHDAnplarrHARVPV 101
                 689*****************************44677777888775 PP
2CCT70.34.8e-24297340144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k+a
  Do010835.1 297 REARLMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRA 340
                 9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003368.9E-5958IPR000315B-box-type zinc finger
CDDcd000210.003721258No hitNo description
PROSITE profilePS5011910.29654101IPR000315B-box-type zinc finger
CDDcd000216.36E-757101No hitNo description
SMARTSM003361.3E-759101IPR000315B-box-type zinc finger
PfamPF062038.6E-18297339IPR010402CCT domain
PROSITE profilePS5101716.896297339IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MELHKYWGVG GRRCGSCEAA PAALHCRSCA STGGASFFCT ACDARPVHAR LGHERVWLCE  60
VCELAPAAVT CKADAAVLCA ACDADIHDAN PLARRHARVP VAPIGSEAAA AAVEAMLFGT  120
AEPAASEAEE QNVAAAAAAE QQQHHQHQHA LNLNVEAKDM KLDYLFSDLD PYLSVEIPRF  180
QHADSVVPSG VGAGNGGAVE LDFTCGIGVK PSSYSSYTAT SLAHSGSSSE VGVVPEAFCG  240
GGGGSFELDF TRPKPQAYMP YTATPQSHSM SSVDMEAVPE RGDMAAARPV PLMGESREAR  300
LMRYREKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRA DHDADGDADD AEAEAAVPSS  360
AVSYVLDFAY GVVPSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010835.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001355037.10.0uncharacterized protein LOC100281837
TrEMBLA0A1E5VU320.0A0A1E5VU32_9POAL; Uncharacterized protein
STRINGPavir.Db00540.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38442348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.18e-45CONSTANS-like 5