PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010774.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family WRKY
Protein Properties Length: 476aa    MW: 49796.7 Da    PI: 5.335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010774.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.67.9e-31235293259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Do010774.1 235 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 293
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.925229295IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-30232295IPR003657WRKY domain
SuperFamilySSF1182903.53E-26232295IPR003657WRKY domain
SMARTSM007741.4E-37234294IPR003657WRKY domain
PfamPF031061.0E-25236293IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MCDYFLQRME GDQAGGGDLT DILRAGGVMP DNAEVPSTTG AEWQLQGEQM LFAPPPSSSD  60
GCAGGAGTDV FGDPFSGLGD PFSSDYASGA DFLDTMPDAM AKVAFDTAVG GGSGCGGGGG  120
GGGGGQLLDM SRKPLLPRGM QMPAVGVLAP RVLPSPLSPR AIRPYPALAG DMVKLGITAG  180
QVAGCAIDAA VVGMQMSSPR AAGGIKRRKN QARKVVCIPA PTAAGGRPTG EVVPSDLWAW  240
RKYGQKPIKG SPYPRGYYRC SSSKGCSARK QVERSRTDPN MLVITYTSEH NHPWPTQRNA  300
LAGSTRNHHG KNSSGSSGSK SSQNERQQQP NVKEEPKDPA TTTTTTSTIT TTTSTSPVAA  360
VKEEAFAGSS EALGRAMDTA VADHSIELMD QVFGESYKPM IPEAGQPDDF FSDLAVLESD  420
PMSLIFSKEY MEAKPSGGGD RAQEKAITKE LDPFDMLDWS TTTSAGSSFE QGKRGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-25209296280Disease resistance protein RRS1
5w3x_D4e-25209296280Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010774.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825027.10.0probable WRKY transcription factor 35
TrEMBLA0A1E5VDC20.0A0A1E5VDC2_9POAL; Putative WRKY transcription factor 35
STRINGSi011735m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25923888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.15e-68WRKY DNA-binding protein 35