PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010746.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | CPP | ||||||||
Protein Properties | Length: 814aa MW: 88173.7 Da PI: 6.2643 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 43.9 | 4.7e-14 | 460 | 500 | 2 | 40 |
TCR 2 ekkgCnCkkskClkk..YCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+ YCeCfaag++Cse C+C++C+Nk Do010746.1 460 ACKRCSCKKSKCLKLyvYCECFAAGVYCSEPCSCQGCMNKP 500 589***********8446*********************96 PP | |||||||
2 | TCR | 50.1 | 5.3e-16 | 547 | 586 | 1 | 40 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+gCnCkks+ClkkYCeC++ g+ Cs++C+Ce+CkN+ Do010746.1 547 RHKRGCNCKKSSCLKKYCECYQGGVGCSSNCRCESCKNTF 586 589***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 3.3E-14 | 459 | 502 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.582 | 460 | 587 | IPR005172 | CRC domain |
Pfam | PF03638 | 8.7E-10 | 462 | 499 | IPR005172 | CRC domain |
SMART | SM01114 | 3.5E-16 | 547 | 588 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 549 | 585 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 814 aa Download sequence Send to blast |
MDTPDRAAAQ PAASRAEDSP VFSFINNLSP IEPLKSVYNT NSLQGYQSIN ITSISSIFTS 60 PHDNVHKEPR LPKSSLGEIS ESEVCADGSN TNKPTKSSNA VRLFACTSTV TQETHTVTCS 120 DVVDPATGSC DLAQPAQFDN GSPDHNTTPC HGVRSDLKQD KCRKLDVVQT VKNTVEKRKC 180 LFSTEIQLMD GGLSVNDNDE VLGCEWADLI STTSGELLAF DSTMDEHHRG VHLAAKNAES 240 CGYLLSKLTG DGEISDRAPP SASGQVYYQE LMMGEDQTEN AEMFQDGQQT ISTEEIQDNI 300 YEANGCIPLD YKVESQQRGI RRRCLVFEAA GFSNSVVQKE TVENLSVSKS KGKSHVQTQP 360 RGLRGIGLHL NALALTPKGK MACLDTMASA LLPSSASEKD AHVKLLSAGE SFPHSGGELL 420 EFPMDDCSAG DFPVNDHVSS QSVSPQKKRR KTDNGDDGEA CKRCSCKKSK CLKLYVYCEC 480 FAAGVYCSEP CSCQGCMNKP IHEETVLSTR KQIEFRNPLA FAPKVIRMSD AGPETGEDPN 540 STPASARHKR GCNCKKSSCL KKYCECYQGG VGCSSNCRCE SCKNTFGRRD GEHLTFVVSD 600 TELTEEMKQE GEQTENCGKE KENDQQKANV QNEDHPLLEL VPITPPFDLS SSLLKLPNFS 660 SAKPPRPSKA RSGNSRLSAS KAATTLQSCK SSKVAGSDID EEMPDILKEA NSPNSCVKTT 720 SPNGKRVSPP HNALSISPNR KGGRKLILKS IPSFPSLMGD SNSGSKMSNT DNTFSASPLA 780 LGKHCFCTCR QHMCYLEIDG SISFILLSTE PGPS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 6e-14 | 462 | 584 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 6e-14 | 462 | 584 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 446 | 450 | KKRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00624 | PBM | Transfer from PK22848.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010746.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK062003 | 1e-148 | AK062003.1 Oryza sativa Japonica Group cDNA clone:001-043-D07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799594.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | A0A1E5VUY1 | 0.0 | A0A1E5VUY1_9POAL; Protein tesmin/TSO1-like CXC 2 | ||||
STRING | Si028949m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6147 | 34 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14770.1 | 1e-86 | TESMIN/TSO1-like CXC 2 |