PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010705.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 218aa MW: 24956.5 Da PI: 8.1854 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 86.2 | 1.9e-27 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrngi+KKA EL +LCdaev +iifsst +lyey+s Do010705.1 10 RIDNSTSRQVTFSKRRNGIFKKARELAILCDAEVGLIIFSSTSRLYEYAS 59 8***********************************************86 PP | |||||||
2 | K-box | 62.9 | 1.3e-21 | 85 | 148 | 35 | 98 |
K-box 35 qRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 +l+G+dL+ L +keLq+Le+qLe sl+ iR+kK++ll+++i+el +k +q++n++L +k+ Do010705.1 85 ELKLMGQDLSGLGVKELQNLENQLEMSLRCIRTKKDQLLVDEIHELNRKGSLIQQDNMELYRKV 148 479**********************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.6E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.342 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.79E-44 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 1.57E-32 | 2 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.728 | 55 | 154 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.2E-19 | 87 | 148 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGIFK KARELAILCD AEVGLIIFSS TSRLYEYAST 60 SMKSVIDRYS RAKEEQQLVA NPDIELKLMG QDLSGLGVKE LQNLENQLEM SLRCIRTKKD 120 QLLVDEIHEL NRKGSLIQQD NMELYRKVNL IRQENVELYK KLYEKEAAGE VNRDSTTPNN 180 FAVVENANIP FHLELNTPPQ ENDVEQPAPP KLGLQLNP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 7e-23 | 1 | 84 | 1 | 84 | MEF2C |
5f28_B | 7e-23 | 1 | 84 | 1 | 84 | MEF2C |
5f28_C | 7e-23 | 1 | 84 | 1 | 84 | MEF2C |
5f28_D | 7e-23 | 1 | 84 | 1 | 84 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010705.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728338 | 2e-77 | KJ728338.1 Zea mays clone pUT6619 MADS transcription factor (MADS63) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021319518.1 | 1e-138 | MADS-box transcription factor 27 isoform X1 | ||||
Swissprot | Q6EP49 | 1e-119 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1E5VYR4 | 1e-158 | A0A1E5VYR4_9POAL; MADS-box transcription factor 27 | ||||
STRING | Pavir.Ga01454.1.p | 1e-140 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP614 | 35 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G57230.1 | 6e-79 | AGAMOUS-like 16 |
Publications ? help Back to Top | |||
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