PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010684.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | MYB | ||||||||
Protein Properties | Length: 286aa MW: 31251.2 Da PI: 6.3039 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.8 | 8.1e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed++lv +++++G g W +r+ g++R++k+c++rw++yl Do010684.1 14 RGPWTATEDDILVSYIQEHGEGKWGCLSRRAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.4 | 1.2e-16 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ +++E+el+++++++lG++ W++Ia +++ gRt++++k++w++ Do010684.1 67 RGNISEDEEELIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 7899******************.*********.************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.405 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-28 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.6E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.7E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-22 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.42E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.348 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 7.9E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-24 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MGRKPCCSKE GLNRGPWTAT EDDILVSYIQ EHGEGKWGCL SRRAGLKRCG KSCRLRWLNY 60 LRPGIKRGNI SEDEEELIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKVLKNS 120 SRSKDDSEAA GAGASSRRRP CSEPIRTASD AAGRRSPEPE ASPVRTKALR CVTRLPVVQQ 180 PATPASLGCP SETATGDDAA RAEQTAIKVA LPPPAVEVKQ DFVAEDDLSL DLDFHMGELG 240 FLSPWRGEIA NGVGLDGRFA SDEVDGLEEL LLGPGGDGDL DEFAWF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Controls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010684.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | D88619 | 1e-102 | D88619.1 Oryza sativa mRNA for OSMYB3, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004986909.1 | 1e-129 | myb-related protein 308 | ||||
Swissprot | P10290 | 7e-60 | MYBC_MAIZE; Anthocyanin regulatory C1 protein | ||||
TrEMBL | A0A1E5WBQ0 | 0.0 | A0A1E5WBQ0_9POAL; Anthocyanin regulatory C1 protein | ||||
STRING | Si038905m | 1e-129 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16770.2 | 1e-49 | myb domain protein 9 |