PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010577.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family GRAS
Protein Properties Length: 642aa    MW: 66730.2 Da    PI: 6.4477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010577.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS284.72.7e-872846413374
        GRAS   3 elLlecAeavssgdlelaqalLarlsel...aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                 e+L e+A+  ++gd+  a+++Larl+ +   a  +g p+ R a+yf+eAL+  l+     + +a +   +++++++ +l a+k+fsevsP+l+f+hlt+
  Do010577.1 284 EQLAEAAKLAEAGDAFGAREILARLNYRlpaAPAAGMPLLRSAFYFKEALRLALSP----TGEAPARPVSTPYDVVLKLGAYKAFSEVSPVLQFAHLTC 378
                 79*************************9994455569******************9....55555555555688************************* PP

        GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rv 196
                  qa+l+++ g+ r+H++Dfdi++G QW++L+q+La+R  ++++l++T+++s++s+++ el+ ++e+L+ fA+elgv ++f ++   ++++l+  eL ++
  Do010577.1 379 VQAVLDELGGAGRIHVLDFDIGMGEQWASLMQELAQR-CPAATLKVTALVSSASHHHLELQLIHENLSGFAAELGVFLQFAAF---NIDTLDSAELvAI 473
                 ************************************9.7889****************************************9...6666666666366 PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                  +g+a+aV+l +   ++         + +++L+lvk+l +kvvv v++ +d+++ +F++++++a++ +++l+ds++a  ++++++ +k+Er+l+++ ++
  Do010577.1 474 TSGDAVAVHLPVGSAHVA--------AMPAILRLVKRLGAKVVVSVDHGCDRTELPFAAHLFQAFQSCVSLLDSIDAV-GSDADAVAKIERFLVQPGVE 563
                 77***********99998........4566*********************************************998.8999***************9 PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 + v +++ +  +  +t   Wr  + ++GF pv+ s++a++qa++ll++++  g+rve++ g+l+l+W++ +LvsvSaWr
  Do010577.1 564 QRVVARHGA-AAMGKTPLPWRTVFASSGFVPVQASTFAESQAEALLKRMALMGFRVEKRGGALCLYWQRSELVSVSAWR 641
                 876666665.477788899***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.687256621IPR005202Transcription factor GRAS
PfamPF035149.3E-85284641IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 642 aa     Download sequence    Send to blast
MPFAGSAREG HAGTLLQLLQ QQQQHQGLAA GKVSGAGGLW EPTSVLDHRH SPSPSPPNSV  60
STLSSPLGAA TAGVAALAGA SAKNVSPPPP AAAWPGGAAG EDAAAGGKEE WHLTPLDMSL  120
GAGEGWDAAG AVLSDGAAPP GLAPDHTFLR WIIGGEDASA AMGAVMDPPV LELEHAPSMM  180
SPAFGPNMPF APAMEDTKVA PFGHASNLLL HHHQHHPQPH AAFFGSHPSF DAAPPAPKRH  240
HPMAGAPAPK LPSFPGPASP AGGFVPTMKP KAEAGNDEAA AAMEQLAEAA KLAEAGDAFG  300
AREILARLNY RLPAAPAAGM PLLRSAFYFK EALRLALSPT GEAPARPVST PYDVVLKLGA  360
YKAFSEVSPV LQFAHLTCVQ AVLDELGGAG RIHVLDFDIG MGEQWASLMQ ELAQRCPAAT  420
LKVTALVSSA SHHHLELQLI HENLSGFAAE LGVFLQFAAF NIDTLDSAEL VAITSGDAVA  480
VHLPVGSAHV AAMPAILRLV KRLGAKVVVS VDHGCDRTEL PFAAHLFQAF QSCVSLLDSI  540
DAVGSDADAV AKIERFLVQP GVEQRVVARH GAAAMGKTPL PWRTVFASSG FVPVQASTFA  600
ESQAEALLKR MALMGFRVEK RGGALCLYWQ RSELVSVSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2631464132375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010577.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277570.0KJ727757.1 Zea mays clone pUT5701 GRAS transcription factor (GRAS33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004983723.10.0scarecrow-like protein 6 isoform X1
TrEMBLA0A1E5VUT00.0A0A1E5VUT0_9POAL; Scarecrow-like protein 6
STRINGSi039098m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67232954
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.18e-87GRAS family protein