PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Do010510.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
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Family | GRAS | ||||||||
Protein Properties | Length: 1778aa MW: 201533 Da PI: 7.3703 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 140.5 | 1.7e-43 | 238 | 407 | 1 | 172 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA av+++d l+++l++++++++s dgd +qRla+y++ +L+arla+ +s++y+ l +++ s +++++++++l ++P+++ s+ aN Do010510.1 238 LRTLLIHCAPAVAADDRLLVTELIKKIRQHSSVDGDCTQRLAFYLADGLEARLAGIGSQVYHRLMAKRVS---VEDVFKIYNLCLAAFPLHRASYTFAN 333 6789************************************************************999998...99************************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeel 172 ++I ea +g+++vHiiDf+i G+QWp+L+q++a++ + pp+lRiTg++ p++g e e+ g+rLa++A+ + Do010510.1 334 RTIIEASKGQSKVHIIDFGICSGFQWPSLIQKFAEQ-GVPPNLRITGIDVPQPGfgPLEINEQAGKRLADYANMF 407 ***********************************6.889*************9988899999*********875 PP | |||||||
2 | GRAS | 152.1 | 5e-47 | 408 | 584 | 198 | 374 |
GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivn 296 ++E+l+Vn+++++ rl de+v+++s+rd+vLk++++++ kv+++ + +++s+ F +rf e l +ys+lfd++++++pr++e+r+ +E +llgre+ n Do010510.1 408 KNEVLIVNCMYRMRRLGDETVDMNSARDRVLKIIRRMNTKVFILGIVNGSYSSPFFITRFKELLFHYSSLFDMFDVNVPRDNEARKLLEGRLLGREALN 506 78************************************************************************************************* PP GRAS 297 vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+acegaer+ r et+++W+ r +aGF+++p++ ++ +++ + + ++ + + +e+ g+l++gWk+r + ++S W+ Do010510.1 507 VIACEGAERTDRPETYKQWQVRCLKAGFEQLPVDPDVLNSILEMKKGIYHEDFVADEDTGWLLQGWKGRVMHAISKWK 584 *************************************************999*************************8 PP | |||||||
3 | GRAS | 319.1 | 9.5e-98 | 842 | 1156 | 2 | 316 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + lL++cAea++s+++ ++lL+r ++++sp+gd qRla yf AL+arla+++s++y++l +++ts +++ l+a++lf ++P+ k+++ Do010510.1 842 RALLIQCAEAIASNNQPFDRELLTRTRNRSSPYGDGSQRLAIYFIDALEARLAGTGSQMYQKLIAKRTS---TTDMLKAYRLFTAACPFTKVAYYYS 935 679************************************************************999998...89*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 Nq+I++ +eg rvHiiDf+i+ G+QWp+L+q +a+R++gpp+lRiTg++ +e+g +++eetg+rLa++Ae ++vpf+++ +a+r+e++ +e+ Do010510.1 936 NQTIVDVLEGRPRVHIIDFGITFGFQWPSLIQRFANREGGPPNLRITGIDVAETGfrPCKRIEETGKRLAEYAEMFNVPFQYQG-LASRWENICIED 1031 ***************************************************99999999*************************.6*********** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres..eerikvEre 288 L+++++E+l++n+ +q+++l d + +++s+rd+vL+l+k+++P v+++ ++ + +s+ Fl rf eal yys+lfd+l+++++r + e+ri +Er Do010510.1 1032 LNIDKDEVLIINCLYQMKNLGDATEDIDSARDRVLRLMKRINPGVLIIGVENGSNSSPFFLPRFREALFYYSSLFDMLNSTVARSHghEARILIERD 1128 ******************************************************9***************************9999989******** PP GRAS 289 llgreivnvvacegaerrerhetlekWr 316 llg ++vnvvacegaer+er ++++W+ Do010510.1 1129 LLGADVVNVVACEGAERIERPANYKQWQ 1156 ***************************8 PP | |||||||
4 | GRAS | 366.2 | 4.6e-112 | 1400 | 1770 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + +L++cA+a+++++l a++lL++++++asp+gd qRla yf+++L+arla+++s++y++l ++t+ ++ l+a++lf ++P+ ++++ Do010510.1 1400 RAVLIQCARAIAENNLPFASELLKKIRHHASPYGDGSQRLALYFANGLEARLAGTGSQIYQKLMEKRTR---ATDMLKAYRLFIAACPFARVAYYFS 1493 789************************************************************999998...99*********************** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 Nq+I + +eg +vHiiDf+i+ G+QWp+L+q +a R++gpp+lRiTg++ p+sg +e+tg+rLa++Ae ++vpf+++ +a+r+e++ +++ Do010510.1 1494 NQTIADVLEGRPKVHIIDFGITLGFQWPSLIQRFAMREGGPPKLRITGIDVPQSGfhPCALIESTGKRLAEYAEMFNVPFQYQG-IASRWENICINN 1589 ******************************************************99888999**********************.7*********** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErell 290 L+++++E+l++n+++++++l de+ +++ +rd+vL+++k+++P+v+++ + ++s+ Fl rf e l +ys+lfd+l++++ +++eeri +Er ll Do010510.1 1590 LNIDNDEVLIINCMYRMKYLGDETEDIDCPRDRVLRIMKRINPEVLILGIVNGLYSSPFFLPRFREVLFHYSSLFDMLNTTVLQNHEERIQIERDLL 1686 ************************************************************************************************* PP GRAS 291 greivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 g + nvvacegaer+er et+++W+ r +aGFk++p+++++ k +k++ d++ ++e+sg+l++gWk+r + +vS+W+ Do010510.1 1687 GAGALNVVACEGAERVERPETYKQWQVRSLKAGFKQLPVNQTILKRSIDEKNKHYHDEFVINEDSGWLLQGWKGRIMHAVSSWK 1770 *********************************************9999999999999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 41.377 | 212 | 564 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.0E-41 | 238 | 407 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-44 | 408 | 584 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50084 | 8.576 | 727 | 788 | IPR004088 | K Homology domain, type 1 |
PROSITE profile | PS50985 | 58.272 | 815 | 1194 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.3E-95 | 842 | 1156 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 64.789 | 1373 | 1750 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.6E-109 | 1400 | 1770 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1778 aa Download sequence Send to blast |
MKGALQAAEK GFYEILGQVY PASWTPLCSS NEAYGPDESR NNCQKRPRRT SFTSDISSHS 60 MLHPLPAPSS PYNYGRSLFL PYQPLTSIGR AARFGFPALQ IIRGAEDAKG YDKLVIYLDS 120 GKLSICRLTT KAKVVKESKY RVFEITDHRN NPYIQDLDTR EGRSSKQHTN TITCEIRQNR 180 KFDRILLCYR LDCFDETRSL QELMAKQASM TSPKGQSKGP AQQKLRGKRQ INKEVVDLRT 240 LLIHCAPAVA ADDRLLVTEL IKKIRQHSSV DGDCTQRLAF YLADGLEARL AGIGSQVYHR 300 LMAKRVSVED VFKIYNLCLA AFPLHRASYT FANRTIIEAS KGQSKVHIID FGICSGFQWP 360 SLIQKFAEQG VPPNLRITGI DVPQPGFGPL EINEQAGKRL ADYANMFKNE VLIVNCMYRM 420 RRLGDETVDM NSARDRVLKI IRRMNTKVFI LGIVNGSYSS PFFITRFKEL LFHYSSLFDM 480 FDVNVPRDNE ARKLLEGRLL GREALNVIAC EGAERTDRPE TYKQWQVRCL KAGFEQLPVD 540 PDVLNSILEM KKGIYHEDFV ADEDTGWLLQ GWKGRVMHAI SKWKPKESCA DHPEYCEINS 600 NTTLEYINRI LMEEDVDENA SIYQERDALQ ATEKPFYDIL EQAYPSSAKE TVMNSDSQVD 660 YPDDSINNYH EGACSGSLVN DFLGPQGMHL TANGCASQND HLSLQFTKGA EEANKFVPII 720 EKLAVDLDSS ELAVSKQMTE AIVGQKGKHV NKIRSHPHVN LELLDARNSK HLAISGSETI 780 RDETFDSVLL CTGQLYRDAA HLRGMKEKEV RDSSQNAQNK GYGQGQVKSR AKKQQEEVTD 840 FRALLIQCAE AIASNNQPFD RELLTRTRNR SSPYGDGSQR LAIYFIDALE ARLAGTGSQM 900 YQKLIAKRTS TTDMLKAYRL FTAACPFTKV AYYYSNQTIV DVLEGRPRVH IIDFGITFGF 960 QWPSLIQRFA NREGGPPNLR ITGIDVAETG FRPCKRIEET GKRLAEYAEM FNVPFQYQGL 1020 ASRWENICIE DLNIDKDEVL IINCLYQMKN LGDATEDIDS ARDRVLRLMK RINPGVLIIG 1080 VENGSNSSPF FLPRFREALF YYSSLFDMLN STVARSHGHE ARILIERDLL GADVVNVVAC 1140 EGAERIERPA NYKQWQINSN MTLNYINRLL MEEDSDEKDS IYQRHDALQA TEKPFYDILG 1200 QAYPSSPKET MINIDNQVDC PQDSCNNYTE RACSGSFVSA ILGPQVMHLV ANDWASECDH 1260 LSSQFERGAE EANKLVPSIE KLVVDLDSNG LSDSNQMIGA AIGQKSKHVS KIRSHPHVDL 1320 ELLQARNSKH LAILASETIR DEMFDSVLLC DWQLQCDAAQ LREMKAKEAS NCSQNVQSKG 1380 NGQGQVRSRC KKKEEGIDLR AVLIQCARAI AENNLPFASE LLKKIRHHAS PYGDGSQRLA 1440 LYFANGLEAR LAGTGSQIYQ KLMEKRTRAT DMLKAYRLFI AACPFARVAY YFSNQTIADV 1500 LEGRPKVHII DFGITLGFQW PSLIQRFAMR EGGPPKLRIT GIDVPQSGFH PCALIESTGK 1560 RLAEYAEMFN VPFQYQGIAS RWENICINNL NIDNDEVLII NCMYRMKYLG DETEDIDCPR 1620 DRVLRIMKRI NPEVLILGIV NGLYSSPFFL PRFREVLFHY SSLFDMLNTT VLQNHEERIQ 1680 IERDLLGAGA LNVVACEGAE RVERPETYKQ WQVRSLKAGF KQLPVNQTIL KRSIDEKNKH 1740 YHDEFVINED SGWLLQGWKG RIMHAVSSWK PKESCSNH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 8e-54 | 219 | 1772 | 1 | 381 | Protein SCARECROW |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Do010510.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022680688.1 | 0.0 | scarecrow-like protein 9 | ||||
Refseq | XP_022680689.1 | 0.0 | scarecrow-like protein 9 | ||||
TrEMBL | A0A1E5VVB5 | 0.0 | A0A1E5VVB5_9POAL; Scarecrow-like protein 9 | ||||
STRING | OBART05G00760.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1505 | 38 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 1e-147 | GRAS family protein |