PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010493.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family Trihelix
Protein Properties Length: 694aa    MW: 72020.8 Da    PI: 9.7108
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010493.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.81.9e-30103187187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l L+++r+em+ ++r++ lk+plWe+vs+k++e+g++rs+k+Ckek+en++k+yk++ke++ +r  ++ +t+++f+qlea
  Do010493.1 103 RWPRQETLXLLKIRSEMDAAFRDATLKGPLWEQVSRKLAEKGYTRSAKKCKEKFENVHKYYKRTKESRAGR--NDGKTYRFFTQLEA 187
                 8********************************************************************97..56668*******85 PP
2trihelix109.52.2e-34487572187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++r+++++r++++  k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Do010493.1 487 RWPKAEVHALIRLRSNLDTRYQEAGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 572
                 8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0011100162IPR001005SANT/Myb domain
PROSITE profilePS500906.806102160IPR017877Myb-like domain
CDDcd122032.88E-28102167No hitNo description
PfamPF138375.1E-21102188No hitNo description
SMARTSM007170.0099484546IPR001005SANT/Myb domain
PROSITE profilePS500907.166486544IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.0E-4486543IPR009057Homeodomain-like
CDDcd122031.81E-30486551No hitNo description
PfamPF138371.2E-23487573No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 694 aa     Download sequence    Send to blast
MQQQHGGGGG GGGGGGGGGG GPAQQFGVQQ VEMPPPFSPT GGAGQRISLA EAPSPISSRP  60
PAPAQQYDEL GASSAGAGGF DAEGLAAAAA GEEGASGGSA GNRWPRQETL XLLKIRSEMD  120
AAFRDATLKG PLWEQVSRKL AEKGYTRSAK KCKEKFENVH KYYKRTKESR AGRNDGKTYR  180
FFTQLEALHG TGGAGGGPAP VASLVPPAAA SVVGVSGAAG PSAVRVPAEL PPAVVAGVGM  240
PMAFGGNQMS FSTSNTEDYS DEEDSDDEGT QELGGGADER GKRKRVSEGG AAAAGGGSGS  300
GKMMRFFEGL MKQVMERQEA MQQRFLEAIE KREQDRMIRE EAWRRQEMTR LAREQEILAQ  360
ERAMAASRDA AVLSFIQKIT GQTIPMPSIA APTINAMPPP PPHPKPPPPQ PHPTPIASAS  420
PAATPPPPAS QPPPAQQPQP SPQQQRSPMP ATPQEQSTDI VMTPAETPHA DTPGYDGSGG  480
GSATPSRWPK AEVHALIRLR SNLDTRYQEA GPKGPLWEEI SAGMRRLGYN RNAKRCKEKW  540
ENINKYFKKV KESNKKRPED SKTCPYFHQL DALYRNKAVL SSSGAGSVVV HASNASSAQQ  600
QETTVTVTAA APISQTPPPP PPTQHASQSQ HAAKNGGSGK GNGGGASEHG ASGGGSGGMQ  660
AQASNGSVAA SRFFSEGGGG GGGAASAAKK VSHS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010493.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794485.10.0trihelix transcription factor GTL1-like isoform X2
SwissprotQ391173e-66TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A1E5WJ090.0A0A1E5WJ09_9POAL; Trihelix transcription factor GT-2
STRINGGRMZM2G414159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-53Trihelix family protein