PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010392.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 316aa    MW: 34249.1 Da    PI: 5.2508
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010392.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.67.1e-0628701454
                HHHHHHHHHHHCTSCC.C....TTS-STCHHHHHHHHHHHHHH CS
         HLH 14 driNsafeeLrellPk.as.kapskKlsKaeiLekAveYIksL 54
                d+i + +++L+ llP+ ++ ++ ++  s a +L+ ++ YI+sL
  Do010392.1 28 DQISELLSKLQALLPEsQTrNGAHRQGSAARVLQDTCSYIRSL 70
                6899************5556666677***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.5021470IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-82874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-62887IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.001082874No hitNo description
SuperFamilySSF549285.02E-13107195IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.6E-9107181IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010210.735110184IPR000504RNA recognition motif domain
SMARTSM003602.0E-5111180IPR000504RNA recognition motif domain
CDDcd122691.61E-29112180No hitNo description
PfamPF000763.8E-7114172IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSSRRSRTR RAGSSSLSSS SSRSISEDQI SELLSKLQAL LPESQTRNGA HRQGSAARVL  60
QDTCSYIRSL HQEVDNLSET LAELLSSADV TSDQAAIIRS LLIIMSETGH TVQVTNLSSR  120
VSESDLHEFF SFSGPIEHIE LIRSGEYGAT AYVTFKERYA LETAALLSGA TIVDQPVCIT  180
YWGQPEETFN FWDRPTWDVE EEIEYRNYQA CQFNATPQEA LTVAQDVVKT MLAKGYVLSK  240
DALAKARAFD ESRGLTAAAA AKAAELSKRI GLTDRVNAGV GAINAGVGAM RSVDESYGIS  300
ETTKTVATAT GRTAAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0687260.0BT068726.1 Zea mays full-length cDNA clone ZM_BFb0380E10 mRNA, complete cds.
GenBankBT0879790.0BT087979.1 Zea mays full-length cDNA clone ZM_BFb0338I06 mRNA, complete cds.
GenBankDQ2457480.0DQ245748.1 Zea mays clone 20071 mRNA sequence.
GenBankEU9647990.0EU964799.1 Zea mays clone 281609 RNA recognition motif containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825769.11e-145binding partner of ACD11 1 isoform X1
TrEMBLA0A1E5VVN50.0A0A1E5VVN5_9POAL; Transcription factor ILI1 (Fragment)
STRINGSi010909m1e-141(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.14e-16bHLH family protein