PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do010386.1
Organism
Dichanthelium oligosanthes
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family SBP
Protein Properties Length: 412aa    MW: 43756 Da    PI: 9.1252
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do010386.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.85e-41170246177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +Cq+egC+adls ak+yhrrhkvCe h+ka+vv+++g++qrfCqqCsrfh l+efDe+krsCr+rLa+hn+rrrk++
  Do010386.1 170 RCQAEGCKADLSAAKHYHRRHKVCEYHAKASVVAAAGKQQRFCQQCSRFHVLTEFDEAKRSCRKRLAEHNRRRRKPA 246
                 6**************************************************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.8E-35163232IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.419168245IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-38169248IPR004333Transcription factor, SBP-box
PfamPF031107.9E-31171244IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MMSGRLNVAT SAAGDDFPFV PMQQQHQPPP PYVGFEHGVA GGGGGMQHHL YDGLDFAAAM  60
QFQEAAPHHH QLLTLPSSLG PMAPPPLPMP LQMPMPMPGM PGDVYPALGM VKREGDGASA  120
AAGGRIGLNL GRRTYFSPGD MLAVDRLLMR SRLGGVFGLG FGGAHHQPPR CQAEGCKADL  180
SAAKHYHRRH KVCEYHAKAS VVAAAGKQQR FCQQCSRFHV LTEFDEAKRS CRKRLAEHNR  240
RRRKPATTAS SKDAASPPAK KPSSGSISGS YTTDNKNLTT SKSTMSSNTG SVISCLQDQG  300
SKQLARPTLT LGASPDKQDH QHQQFSTMLH QAQAATGGQH HQEQHFLTSL QVHNHGNGGG  360
GGSGNNNILS CSSVCSSALP SANGEASDQN TTNNNGGGGN GNMHNLFEVD FM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-291712441184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227244KRSCRKRLAEHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapDo010386.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0339370.0BT033937.1 Zea mays full-length cDNA clone ZM_BFc0033O21 mRNA, complete cds.
GenBankBT0342980.0BT034298.1 Zea mays full-length cDNA clone ZM_BFc0007A11 mRNA, complete cds.
GenBankBT0657120.0BT065712.1 Zea mays full-length cDNA clone ZM_BFc0041B17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004965676.10.0squamosa promoter-binding-like protein 10
SwissprotA2YFT91e-111SPL10_ORYSI; Squamosa promoter-binding-like protein 10
SwissprotQ0DAE81e-111SPL10_ORYSJ; Squamosa promoter-binding-like protein 10
TrEMBLA0A1E5VVH00.0A0A1E5VVH0_9POAL; Squamosa promoter-binding-like protein 10
STRINGSi006559m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23753593
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-48squamosa promoter binding protein-like 8